FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2228, 259 aa 1>>>pF1KE2228 259 - 259 aa - 259 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.2425+/-0.000887; mu= 10.0342+/- 0.053 mean_var=76.5196+/-14.828, 0's: 0 Z-trim(106.6): 24 B-trim: 0 in 0/49 Lambda= 0.146618 statistics sampled from 9078 (9084) to 9078 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.649), E-opt: 0.2 (0.279), width: 16 Scan time: 2.260 The best scores are: opt bits E(32554) CCDS666.1 TYW3 gene_id:127253|Hs108|chr1 ( 259) 1725 374.1 5.2e-104 CCDS53334.1 TYW3 gene_id:127253|Hs108|chr1 ( 226) 932 206.4 1.4e-53 >>CCDS666.1 TYW3 gene_id:127253|Hs108|chr1 (259 aa) initn: 1725 init1: 1725 opt: 1725 Z-score: 1980.8 bits: 374.1 E(32554): 5.2e-104 Smith-Waterman score: 1725; 100.0% identity (100.0% similar) in 259 aa overlap (1-259:1-259) 10 20 30 40 50 60 pF1KE2 MDRSAEFRKWKAQCLSKADLSRKGSVDEDVVELVQFLNMRDQFFTTSSCAGRILLLDRGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS66 MDRSAEFRKWKAQCLSKADLSRKGSVDEDVVELVQFLNMRDQFFTTSSCAGRILLLDRGI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 NGFEVQKQNCCWLLVTHKLCVKDDVIVALKKANGDATLKFEPFVLHVQCRQLQDAQILHS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS66 NGFEVQKQNCCWLLVTHKLCVKDDVIVALKKANGDATLKFEPFVLHVQCRQLQDAQILHS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 MAIDSGFRNSGITVGKRGKTMLAVRSTHGLEVPLSHKGKLMVTEEYIDFLLNVANQKMEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS66 MAIDSGFRNSGITVGKRGKTMLAVRSTHGLEVPLSHKGKLMVTEEYIDFLLNVANQKMEE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 NKKRIERFYNCLQHALERETMTNLHPKIKEKNNSSYIHKKKRNPEKTRAQCITKESDEEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS66 NKKRIERFYNCLQHALERETMTNLHPKIKEKNNSSYIHKKKRNPEKTRAQCITKESDEEL 190 200 210 220 230 240 250 pF1KE2 ENDDDDDLGINVTIFPEDY ::::::::::::::::::: CCDS66 ENDDDDDLGINVTIFPEDY 250 >>CCDS53334.1 TYW3 gene_id:127253|Hs108|chr1 (226 aa) initn: 928 init1: 928 opt: 932 Z-score: 1075.2 bits: 206.4 E(32554): 1.4e-53 Smith-Waterman score: 1435; 87.3% identity (87.3% similar) in 259 aa overlap (1-259:1-226) 10 20 30 40 50 60 pF1KE2 MDRSAEFRKWKAQCLSKADLSRKGSVDEDVVELVQFLNMRDQFFTTSSCAGRILLLDRGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 MDRSAEFRKWKAQCLSKADLSRKGSVDEDVVELVQFLNMRDQFFTTSSCAGRILLLDRGI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 NGFEVQKQNCCWLLVTHKLCVKDDVIVALKKANGDATLKFEPFVLHVQCRQLQDAQILHS ::::::::::::::::::::::::: :: CCDS53 NGFEVQKQNCCWLLVTHKLCVKDDV---------------------------------HS 70 80 130 140 150 160 170 180 pF1KE2 MAIDSGFRNSGITVGKRGKTMLAVRSTHGLEVPLSHKGKLMVTEEYIDFLLNVANQKMEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 MAIDSGFRNSGITVGKRGKTMLAVRSTHGLEVPLSHKGKLMVTEEYIDFLLNVANQKMEE 90 100 110 120 130 140 190 200 210 220 230 240 pF1KE2 NKKRIERFYNCLQHALERETMTNLHPKIKEKNNSSYIHKKKRNPEKTRAQCITKESDEEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 NKKRIERFYNCLQHALERETMTNLHPKIKEKNNSSYIHKKKRNPEKTRAQCITKESDEEL 150 160 170 180 190 200 250 pF1KE2 ENDDDDDLGINVTIFPEDY ::::::::::::::::::: CCDS53 ENDDDDDLGINVTIFPEDY 210 220 259 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 19:15:35 2016 done: Sun Nov 6 19:15:35 2016 Total Scan time: 2.260 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]