FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6683, 320 aa
  1>>>pF1KE6683 320 - 320 aa - 320 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2810+/-0.000288; mu= 13.5496+/- 0.018
 mean_var=128.1273+/-25.301, 0's: 0 Z-trim(121.6): 2  B-trim: 128 in 1/58
 Lambda= 0.113306
 statistics sampled from 38558 (38560) to 38558 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.786), E-opt: 0.2 (0.452), width:  16
 Scan time:  6.580

The best scores are:                                      opt bits E(85289)
NP_476517 (OMIM: 602522,606412) barttin [Homo sapi ( 320) 2250 378.3 1.2e-104


>>NP_476517 (OMIM: 602522,606412) barttin [Homo sapiens]  (320 aa)
 initn: 2250 init1: 2250 opt: 2250  Z-score: 2000.0  bits: 378.3 E(85289): 1.2e-104
Smith-Waterman score: 2250; 100.0% identity (100.0% similar) in 320 aa overlap (1-320:1-320)

               10        20        30        40        50        60
pF1KE6 MADEKTFRIGFIVLGLFLLALGTFLMSHDRPQVYGTFYAMGSVMVIGGIIWSMCQCYPKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_476 MADEKTFRIGFIVLGLFLLALGTFLMSHDRPQVYGTFYAMGSVMVIGGIIWSMCQCYPKI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 TFVPADSDFQGILSPKAMGLLENGLAAEMKSPSPQPPYVRLWEEAAYDQSLPDFSHIQMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_476 TFVPADSDFQGILSPKAMGLLENGLAAEMKSPSPQPPYVRLWEEAAYDQSLPDFSHIQMK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 VMSYSEDHRSLLAPEMGQPKLGTSDGGEGGPGDVQAWMEAAVVIHKGSDESEGERRLTQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_476 VMSYSEDHRSLLAPEMGQPKLGTSDGGEGGPGDVQAWMEAAVVIHKGSDESEGERRLTQS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 WPGPLACPQGPAPLASFQDDLDMDSSEGSSPNASPHDREEACSPQQEPQGCRCPLDRFQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_476 WPGPLACPQGPAPLASFQDDLDMDSSEGSSPNASPHDREEACSPQQEPQGCRCPLDRFQD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 FALIDAPTLEDEPQEGQQWEIALPNNWQRYPRTKVEEKEASDTGGEEPEKEEEDLYYGLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_476 FALIDAPTLEDEPQEGQQWEIALPNNWQRYPRTKVEEKEASDTGGEEPEKEEEDLYYGLP
              250       260       270       280       290       300

              310       320
pF1KE6 DGAGDLLPDKELGFEPDTQG
       ::::::::::::::::::::
NP_476 DGAGDLLPDKELGFEPDTQG
              310       320




320 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 15:23:15 2016 done: Tue Nov  8 15:23:16 2016
 Total Scan time:  6.580 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]