FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3683, 208 aa
  1>>>pF1KE3683 208 - 208 aa - 208 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1503+/-0.000944; mu= 10.4068+/- 0.057
 mean_var=88.6665+/-17.460, 0's: 0 Z-trim(106.9): 24  B-trim: 53 in 1/49
 Lambda= 0.136205
 statistics sampled from 9236 (9243) to 9236 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.663), E-opt: 0.2 (0.284), width:  16
 Scan time:  1.930

The best scores are:                                      opt bits E(32554)
CCDS587.1 TCEANC2 gene_id:127428|Hs108|chr1        ( 208) 1324 269.7   9e-73


>>CCDS587.1 TCEANC2 gene_id:127428|Hs108|chr1             (208 aa)
 initn: 1324 init1: 1324 opt: 1324  Z-score: 1420.0  bits: 269.7 E(32554): 9e-73
Smith-Waterman score: 1324; 100.0% identity (100.0% similar) in 208 aa overlap (1-208:1-208)

               10        20        30        40        50        60
pF1KE3 MDKFVIRTPRIQNSPQKKDSGGKVYKQATIESLKRVVVVEDIKRWKTMLELPDQTKENLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MDKFVIRTPRIQNSPQKKDSGGKVYKQATIESLKRVVVVEDIKRWKTMLELPDQTKENLV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 EALQELKKKIPSREVLKSTRIGHTVNKMRKHSDSEVASLAREVYTEWKTFTEKHSNRPSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 EALQELKKKIPSREVLKSTRIGHTVNKMRKHSDSEVASLAREVYTEWKTFTEKHSNRPSI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 EVRSDPKTESLRKNAQKLLSEALELKMDHLLVENIERETFHLCSRLINGPYRRTVRALVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 EVRSDPKTESLRKNAQKLLSEALELKMDHLLVENIERETFHLCSRLINGPYRRTVRALVF
              130       140       150       160       170       180

              190       200        
pF1KE3 TLKHRAEIRAQVKSGSLPVGTFVQTHKK
       ::::::::::::::::::::::::::::
CCDS58 TLKHRAEIRAQVKSGSLPVGTFVQTHKK
              190       200        




208 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 19:19:04 2016 done: Sun Nov  6 19:19:04 2016
 Total Scan time:  1.930 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]