FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2098, 812 aa
  1>>>pF1KE2098 812 - 812 aa - 812 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.7400+/-0.00088; mu= 10.3557+/- 0.053
 mean_var=153.0935+/-30.296, 0's: 0 Z-trim(112.2): 13  B-trim: 0 in 0/52
 Lambda= 0.103656
 statistics sampled from 12978 (12984) to 12978 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.733), E-opt: 0.2 (0.399), width:  16
 Scan time:  4.830

The best scores are:                                      opt bits E(32554)
CCDS533.1 LRRC41 gene_id:10489|Hs108|chr1          ( 812) 5383 817.2       0


>>CCDS533.1 LRRC41 gene_id:10489|Hs108|chr1               (812 aa)
 initn: 5383 init1: 5383 opt: 5383  Z-score: 4357.5  bits: 817.2 E(32554):    0
Smith-Waterman score: 5383; 100.0% identity (100.0% similar) in 812 aa overlap (1-812:1-812)

               10        20        30        40        50        60
pF1KE2 MAAPEAWRARSCWFCEVAAATTMEATSREAAPAKSSASGPNAPPALFELCGRAVSAHMGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MAAPEAWRARSCWFCEVAAATTMEATSREAAPAKSSASGPNAPPALFELCGRAVSAHMGV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 LESGVWALPGPILQSILPLLNIYYLERIEETALKKGLSTQAIWRRLWDELMKTRPSSLES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LESGVWALPGPILQSILPLLNIYYLERIEETALKKGLSTQAIWRRLWDELMKTRPSSLES
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 VTCWRAKFMEAFFSHVLRGTIDVSSDRRLCDQRFSPLLHSSRHVRQLTICNMLQGATELV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 VTCWRAKFMEAFFSHVLRGTIDVSSDRRLCDQRFSPLLHSSRHVRQLTICNMLQGATELV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 AEPNRRVLETLASSLHTLKFRHLLFSDVAAQQSLRQLLHQLIHHGAVSQVSLYSWPVPES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 AEPNRRVLETLASSLHTLKFRHLLFSDVAAQQSLRQLLHQLIHHGAVSQVSLYSWPVPES
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 ALFILILTMSAGFWQPGPGGPPCRLCGEASRGRAPSRDEGSLLLGSRRPRRDAAERCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 ALFILILTMSAGFWQPGPGGPPCRLCGEASRGRAPSRDEGSLLLGSRRPRRDAAERCAAA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 LMASRRKSEAKQMPRAAPATRVTRRSTQESLTAGGTDLKRELHPPATSHEAPGTKRSPSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LMASRRKSEAKQMPRAAPATRVTRRSTQESLTAGGTDLKRELHPPATSHEAPGTKRSPSA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 PAATSSASSSTSSYKRAPASSAPQPKPLKRFKRAAGKKGARTRQGPGAESEDLYDFVFIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 PAATSSASSSTSSYKRAPASSAPQPKPLKRFKRAAGKKGARTRQGPGAESEDLYDFVFIV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE2 AGEKEDGEEMEIGEVACGALDGSDPSCLGLPALEASQRFRSISTLELFTVPLSTEAALTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 AGEKEDGEEMEIGEVACGALDGSDPSCLGLPALEASQRFRSISTLELFTVPLSTEAALTL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE2 CHLLSSWVSLESLTLSYNGLGSNIFRLLDSLRALSGQAGCRLRALHLSDLFSPLPILELT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 CHLLSSWVSLESLTLSYNGLGSNIFRLLDSLRALSGQAGCRLRALHLSDLFSPLPILELT
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE2 RAIVRALPLLRVLSIRVDHPSQRDNPGVPGNAGPPSHIIGDEEIPENCLEQLEMGFPRGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 RAIVRALPLLRVLSIRVDHPSQRDNPGVPGNAGPPSHIIGDEEIPENCLEQLEMGFPRGA
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE2 QPAPLLCSVLKASGSLQQLSLDSATFASPQDFGLVLQTLKEYNLALKRLSFHDMNLADCQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 QPAPLLCSVLKASGSLQQLSLDSATFASPQDFGLVLQTLKEYNLALKRLSFHDMNLADCQ
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE2 SEVLFLLQNLTLQEITFSFCRLFEKRPAQFLPEMVAAMKGNSTLKGLRLPGNRLGNAGLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 SEVLFLLQNLTLQEITFSFCRLFEKRPAQFLPEMVAAMKGNSTLKGLRLPGNRLGNAGLL
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KE2 ALADVFSEDSSSSLCQLDISSNCIKPDGLLEFAKRLERWGRGAFGHLRLFQNWLDQDAVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 ALADVFSEDSSSSLCQLDISSNCIKPDGLLEFAKRLERWGRGAFGHLRLFQNWLDQDAVT
              730       740       750       760       770       780

              790       800       810  
pF1KE2 AREAIRRLRATCHVVSDSWDSSQAFADYVSTM
       ::::::::::::::::::::::::::::::::
CCDS53 AREAIRRLRATCHVVSDSWDSSQAFADYVSTM
              790       800       810  




812 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 19:20:20 2016 done: Sun Nov  6 19:20:21 2016
 Total Scan time:  4.830 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]