Result of FASTA (omim) for
pFN21AE3243
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3243, 566 aa
1>>>pF1KE3243 566 - 566 aa - 566 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.1433+/-0.00034; mu= 16.4720+/- 0.022
mean_var=113.8946+/-22.671, 0's: 0 Z-trim(117.7): 53 B-trim: 92 in 1/55
Lambda= 0.120177
statistics sampled from 29932 (29989) to 29932 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.72), E-opt: 0.2 (0.352), width: 16
Scan time: 9.820
The best scores are: opt bits E(85289)
NP_060620 (OMIM: 616136) E3 ubiquitin-protein liga ( 566) 3866 681.3 2.2e-195
XP_016857113 (OMIM: 616136) PREDICTED: E3 ubiquiti ( 566) 3866 681.3 2.2e-195
NP_001306885 (OMIM: 616136) E3 ubiquitin-protein l ( 566) 3866 681.3 2.2e-195
XP_016857114 (OMIM: 616136) PREDICTED: E3 ubiquiti ( 566) 3866 681.3 2.2e-195
XP_016857112 (OMIM: 616136) PREDICTED: E3 ubiquiti ( 566) 3866 681.3 2.2e-195
XP_011540000 (OMIM: 616136) PREDICTED: E3 ubiquiti ( 592) 2235 398.5 3e-110
XP_005271050 (OMIM: 616136) PREDICTED: E3 ubiquiti ( 592) 2235 398.5 3e-110
XP_011540002 (OMIM: 616136) PREDICTED: E3 ubiquiti ( 592) 2235 398.5 3e-110
XP_005271049 (OMIM: 616136) PREDICTED: E3 ubiquiti ( 592) 2235 398.5 3e-110
XP_011540001 (OMIM: 616136) PREDICTED: E3 ubiquiti ( 592) 2235 398.5 3e-110
XP_011540004 (OMIM: 616136) PREDICTED: E3 ubiquiti ( 327) 2223 396.2 8.3e-110
XP_006710798 (OMIM: 616136) PREDICTED: E3 ubiquiti ( 323) 2133 380.6 4.1e-105
XP_016857115 (OMIM: 616136) PREDICTED: E3 ubiquiti ( 305) 2090 373.2 6.9e-103
XP_005271053 (OMIM: 616136) PREDICTED: E3 ubiquiti ( 308) 1635 294.3 3.9e-79
NP_001306886 (OMIM: 616136) E3 ubiquitin-protein l ( 353) 1635 294.3 4.3e-79
>>NP_060620 (OMIM: 616136) E3 ubiquitin-protein ligase R (566 aa)
initn: 3866 init1: 3866 opt: 3866 Z-score: 3628.7 bits: 681.3 E(85289): 2.2e-195
Smith-Waterman score: 3866; 100.0% identity (100.0% similar) in 566 aa overlap (1-566:1-566)
10 20 30 40 50 60
pF1KE3 MDLHRAAFKMENSSYLPNPLASPALMVLASTAEASRDASIPCQQPRPFGVPVSVDKDVHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MDLHRAAFKMENSSYLPNPLASPALMVLASTAEASRDASIPCQQPRPFGVPVSVDKDVHI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 PFTNGSYTFASMYHRQGGVPGTFANRDFPPSLLHLHPQFAPPNLDCTPISMLNHSGVGAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 PFTNGSYTFASMYHRQGGVPGTFANRDFPPSLLHLHPQFAPPNLDCTPISMLNHSGVGAF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 RPFASTEDRESYQSAFTPAKRLKNCHDTESPHLRFSDADGKEYDFGTQLPSSSPGSLKVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 RPFASTEDRESYQSAFTPAKRLKNCHDTESPHLRFSDADGKEYDFGTQLPSSSPGSLKVD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 DTGKKIFAVSGLISDREASSSPEDRNDRCKKKAAALFDSQAPICPICQVLLRPSELQEHM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 DTGKKIFAVSGLISDREASSSPEDRNDRCKKKAAALFDSQAPICPICQVLLRPSELQEHM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 EQELEQLAQLPSSKNSLLKDAMAPGTPKSLLLSASIKREGESPTASPHSSATDDLHHSDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 EQELEQLAQLPSSKNSLLKDAMAPGTPKSLLLSASIKREGESPTASPHSSATDDLHHSDR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 YQTFLRVRANRQTRLNARIGKMKRRKQDEGQREGSCMAEDDAVDIEHENNNRFEEYEWCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 YQTFLRVRANRQTRLNARIGKMKRRKQDEGQREGSCMAEDDAVDIEHENNNRFEEYEWCG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 QKRIRATTLLEGGFRGSGFIMCSGKENPDSDADLDVDGDDTLEYGKPQYTEADVIPCTGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 QKRIRATTLLEGGFRGSGFIMCSGKENPDSDADLDVDGDDTLEYGKPQYTEADVIPCTGE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 EPGEAKEREALRGAVLNGGPPSTRITPEFSKWASDEMPSTSNGESSKQEAMQKTCKNSDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 EPGEAKEREALRGAVLNGGPPSTRITPEFSKWASDEMPSTSNGESSKQEAMQKTCKNSDI
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE3 EKITEDSAVTTFEALKARVRELERQLSRGDRYKCLICMDSYSMPLTSIQCWHVHCEECWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 EKITEDSAVTTFEALKARVRELERQLSRGDRYKCLICMDSYSMPLTSIQCWHVHCEECWL
490 500 510 520 530 540
550 560
pF1KE3 RTLGAKKLCPQCNTITAPGDLRRIYL
::::::::::::::::::::::::::
NP_060 RTLGAKKLCPQCNTITAPGDLRRIYL
550 560
>>XP_016857113 (OMIM: 616136) PREDICTED: E3 ubiquitin-pr (566 aa)
initn: 3866 init1: 3866 opt: 3866 Z-score: 3628.7 bits: 681.3 E(85289): 2.2e-195
Smith-Waterman score: 3866; 100.0% identity (100.0% similar) in 566 aa overlap (1-566:1-566)
10 20 30 40 50 60
pF1KE3 MDLHRAAFKMENSSYLPNPLASPALMVLASTAEASRDASIPCQQPRPFGVPVSVDKDVHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDLHRAAFKMENSSYLPNPLASPALMVLASTAEASRDASIPCQQPRPFGVPVSVDKDVHI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 PFTNGSYTFASMYHRQGGVPGTFANRDFPPSLLHLHPQFAPPNLDCTPISMLNHSGVGAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PFTNGSYTFASMYHRQGGVPGTFANRDFPPSLLHLHPQFAPPNLDCTPISMLNHSGVGAF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 RPFASTEDRESYQSAFTPAKRLKNCHDTESPHLRFSDADGKEYDFGTQLPSSSPGSLKVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RPFASTEDRESYQSAFTPAKRLKNCHDTESPHLRFSDADGKEYDFGTQLPSSSPGSLKVD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 DTGKKIFAVSGLISDREASSSPEDRNDRCKKKAAALFDSQAPICPICQVLLRPSELQEHM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DTGKKIFAVSGLISDREASSSPEDRNDRCKKKAAALFDSQAPICPICQVLLRPSELQEHM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 EQELEQLAQLPSSKNSLLKDAMAPGTPKSLLLSASIKREGESPTASPHSSATDDLHHSDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EQELEQLAQLPSSKNSLLKDAMAPGTPKSLLLSASIKREGESPTASPHSSATDDLHHSDR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 YQTFLRVRANRQTRLNARIGKMKRRKQDEGQREGSCMAEDDAVDIEHENNNRFEEYEWCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YQTFLRVRANRQTRLNARIGKMKRRKQDEGQREGSCMAEDDAVDIEHENNNRFEEYEWCG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 QKRIRATTLLEGGFRGSGFIMCSGKENPDSDADLDVDGDDTLEYGKPQYTEADVIPCTGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QKRIRATTLLEGGFRGSGFIMCSGKENPDSDADLDVDGDDTLEYGKPQYTEADVIPCTGE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 EPGEAKEREALRGAVLNGGPPSTRITPEFSKWASDEMPSTSNGESSKQEAMQKTCKNSDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EPGEAKEREALRGAVLNGGPPSTRITPEFSKWASDEMPSTSNGESSKQEAMQKTCKNSDI
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE3 EKITEDSAVTTFEALKARVRELERQLSRGDRYKCLICMDSYSMPLTSIQCWHVHCEECWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EKITEDSAVTTFEALKARVRELERQLSRGDRYKCLICMDSYSMPLTSIQCWHVHCEECWL
490 500 510 520 530 540
550 560
pF1KE3 RTLGAKKLCPQCNTITAPGDLRRIYL
::::::::::::::::::::::::::
XP_016 RTLGAKKLCPQCNTITAPGDLRRIYL
550 560
>>NP_001306885 (OMIM: 616136) E3 ubiquitin-protein ligas (566 aa)
initn: 3866 init1: 3866 opt: 3866 Z-score: 3628.7 bits: 681.3 E(85289): 2.2e-195
Smith-Waterman score: 3866; 100.0% identity (100.0% similar) in 566 aa overlap (1-566:1-566)
10 20 30 40 50 60
pF1KE3 MDLHRAAFKMENSSYLPNPLASPALMVLASTAEASRDASIPCQQPRPFGVPVSVDKDVHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDLHRAAFKMENSSYLPNPLASPALMVLASTAEASRDASIPCQQPRPFGVPVSVDKDVHI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 PFTNGSYTFASMYHRQGGVPGTFANRDFPPSLLHLHPQFAPPNLDCTPISMLNHSGVGAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PFTNGSYTFASMYHRQGGVPGTFANRDFPPSLLHLHPQFAPPNLDCTPISMLNHSGVGAF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 RPFASTEDRESYQSAFTPAKRLKNCHDTESPHLRFSDADGKEYDFGTQLPSSSPGSLKVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RPFASTEDRESYQSAFTPAKRLKNCHDTESPHLRFSDADGKEYDFGTQLPSSSPGSLKVD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 DTGKKIFAVSGLISDREASSSPEDRNDRCKKKAAALFDSQAPICPICQVLLRPSELQEHM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DTGKKIFAVSGLISDREASSSPEDRNDRCKKKAAALFDSQAPICPICQVLLRPSELQEHM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 EQELEQLAQLPSSKNSLLKDAMAPGTPKSLLLSASIKREGESPTASPHSSATDDLHHSDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EQELEQLAQLPSSKNSLLKDAMAPGTPKSLLLSASIKREGESPTASPHSSATDDLHHSDR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 YQTFLRVRANRQTRLNARIGKMKRRKQDEGQREGSCMAEDDAVDIEHENNNRFEEYEWCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YQTFLRVRANRQTRLNARIGKMKRRKQDEGQREGSCMAEDDAVDIEHENNNRFEEYEWCG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 QKRIRATTLLEGGFRGSGFIMCSGKENPDSDADLDVDGDDTLEYGKPQYTEADVIPCTGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QKRIRATTLLEGGFRGSGFIMCSGKENPDSDADLDVDGDDTLEYGKPQYTEADVIPCTGE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 EPGEAKEREALRGAVLNGGPPSTRITPEFSKWASDEMPSTSNGESSKQEAMQKTCKNSDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EPGEAKEREALRGAVLNGGPPSTRITPEFSKWASDEMPSTSNGESSKQEAMQKTCKNSDI
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE3 EKITEDSAVTTFEALKARVRELERQLSRGDRYKCLICMDSYSMPLTSIQCWHVHCEECWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKITEDSAVTTFEALKARVRELERQLSRGDRYKCLICMDSYSMPLTSIQCWHVHCEECWL
490 500 510 520 530 540
550 560
pF1KE3 RTLGAKKLCPQCNTITAPGDLRRIYL
::::::::::::::::::::::::::
NP_001 RTLGAKKLCPQCNTITAPGDLRRIYL
550 560
>>XP_016857114 (OMIM: 616136) PREDICTED: E3 ubiquitin-pr (566 aa)
initn: 3866 init1: 3866 opt: 3866 Z-score: 3628.7 bits: 681.3 E(85289): 2.2e-195
Smith-Waterman score: 3866; 100.0% identity (100.0% similar) in 566 aa overlap (1-566:1-566)
10 20 30 40 50 60
pF1KE3 MDLHRAAFKMENSSYLPNPLASPALMVLASTAEASRDASIPCQQPRPFGVPVSVDKDVHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDLHRAAFKMENSSYLPNPLASPALMVLASTAEASRDASIPCQQPRPFGVPVSVDKDVHI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 PFTNGSYTFASMYHRQGGVPGTFANRDFPPSLLHLHPQFAPPNLDCTPISMLNHSGVGAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PFTNGSYTFASMYHRQGGVPGTFANRDFPPSLLHLHPQFAPPNLDCTPISMLNHSGVGAF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 RPFASTEDRESYQSAFTPAKRLKNCHDTESPHLRFSDADGKEYDFGTQLPSSSPGSLKVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RPFASTEDRESYQSAFTPAKRLKNCHDTESPHLRFSDADGKEYDFGTQLPSSSPGSLKVD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 DTGKKIFAVSGLISDREASSSPEDRNDRCKKKAAALFDSQAPICPICQVLLRPSELQEHM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DTGKKIFAVSGLISDREASSSPEDRNDRCKKKAAALFDSQAPICPICQVLLRPSELQEHM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 EQELEQLAQLPSSKNSLLKDAMAPGTPKSLLLSASIKREGESPTASPHSSATDDLHHSDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EQELEQLAQLPSSKNSLLKDAMAPGTPKSLLLSASIKREGESPTASPHSSATDDLHHSDR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 YQTFLRVRANRQTRLNARIGKMKRRKQDEGQREGSCMAEDDAVDIEHENNNRFEEYEWCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YQTFLRVRANRQTRLNARIGKMKRRKQDEGQREGSCMAEDDAVDIEHENNNRFEEYEWCG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 QKRIRATTLLEGGFRGSGFIMCSGKENPDSDADLDVDGDDTLEYGKPQYTEADVIPCTGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QKRIRATTLLEGGFRGSGFIMCSGKENPDSDADLDVDGDDTLEYGKPQYTEADVIPCTGE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 EPGEAKEREALRGAVLNGGPPSTRITPEFSKWASDEMPSTSNGESSKQEAMQKTCKNSDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EPGEAKEREALRGAVLNGGPPSTRITPEFSKWASDEMPSTSNGESSKQEAMQKTCKNSDI
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE3 EKITEDSAVTTFEALKARVRELERQLSRGDRYKCLICMDSYSMPLTSIQCWHVHCEECWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EKITEDSAVTTFEALKARVRELERQLSRGDRYKCLICMDSYSMPLTSIQCWHVHCEECWL
490 500 510 520 530 540
550 560
pF1KE3 RTLGAKKLCPQCNTITAPGDLRRIYL
::::::::::::::::::::::::::
XP_016 RTLGAKKLCPQCNTITAPGDLRRIYL
550 560
>>XP_016857112 (OMIM: 616136) PREDICTED: E3 ubiquitin-pr (566 aa)
initn: 3866 init1: 3866 opt: 3866 Z-score: 3628.7 bits: 681.3 E(85289): 2.2e-195
Smith-Waterman score: 3866; 100.0% identity (100.0% similar) in 566 aa overlap (1-566:1-566)
10 20 30 40 50 60
pF1KE3 MDLHRAAFKMENSSYLPNPLASPALMVLASTAEASRDASIPCQQPRPFGVPVSVDKDVHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDLHRAAFKMENSSYLPNPLASPALMVLASTAEASRDASIPCQQPRPFGVPVSVDKDVHI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 PFTNGSYTFASMYHRQGGVPGTFANRDFPPSLLHLHPQFAPPNLDCTPISMLNHSGVGAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PFTNGSYTFASMYHRQGGVPGTFANRDFPPSLLHLHPQFAPPNLDCTPISMLNHSGVGAF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 RPFASTEDRESYQSAFTPAKRLKNCHDTESPHLRFSDADGKEYDFGTQLPSSSPGSLKVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RPFASTEDRESYQSAFTPAKRLKNCHDTESPHLRFSDADGKEYDFGTQLPSSSPGSLKVD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 DTGKKIFAVSGLISDREASSSPEDRNDRCKKKAAALFDSQAPICPICQVLLRPSELQEHM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DTGKKIFAVSGLISDREASSSPEDRNDRCKKKAAALFDSQAPICPICQVLLRPSELQEHM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 EQELEQLAQLPSSKNSLLKDAMAPGTPKSLLLSASIKREGESPTASPHSSATDDLHHSDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EQELEQLAQLPSSKNSLLKDAMAPGTPKSLLLSASIKREGESPTASPHSSATDDLHHSDR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 YQTFLRVRANRQTRLNARIGKMKRRKQDEGQREGSCMAEDDAVDIEHENNNRFEEYEWCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YQTFLRVRANRQTRLNARIGKMKRRKQDEGQREGSCMAEDDAVDIEHENNNRFEEYEWCG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 QKRIRATTLLEGGFRGSGFIMCSGKENPDSDADLDVDGDDTLEYGKPQYTEADVIPCTGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QKRIRATTLLEGGFRGSGFIMCSGKENPDSDADLDVDGDDTLEYGKPQYTEADVIPCTGE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 EPGEAKEREALRGAVLNGGPPSTRITPEFSKWASDEMPSTSNGESSKQEAMQKTCKNSDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EPGEAKEREALRGAVLNGGPPSTRITPEFSKWASDEMPSTSNGESSKQEAMQKTCKNSDI
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE3 EKITEDSAVTTFEALKARVRELERQLSRGDRYKCLICMDSYSMPLTSIQCWHVHCEECWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EKITEDSAVTTFEALKARVRELERQLSRGDRYKCLICMDSYSMPLTSIQCWHVHCEECWL
490 500 510 520 530 540
550 560
pF1KE3 RTLGAKKLCPQCNTITAPGDLRRIYL
::::::::::::::::::::::::::
XP_016 RTLGAKKLCPQCNTITAPGDLRRIYL
550 560
>>XP_011540000 (OMIM: 616136) PREDICTED: E3 ubiquitin-pr (592 aa)
initn: 2233 init1: 2233 opt: 2235 Z-score: 2100.2 bits: 398.5 E(85289): 3e-110
Smith-Waterman score: 3804; 95.6% identity (95.6% similar) in 592 aa overlap (1-566:1-592)
10 20 30 40 50 60
pF1KE3 MDLHRAAFKMENSSYLPNPLASPALMVLASTAEASRDASIPCQQPRPFGVPVSVDKDVHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MDLHRAAFKMENSSYLPNPLASPALMVLASTAEASRDASIPCQQPRPFGVPVSVDKDVHI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 PFTNGSYTFASMYHRQGGVPGTFANRDFPPSLLHLHPQFAPPNLDCTPISMLNHSGVGAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PFTNGSYTFASMYHRQGGVPGTFANRDFPPSLLHLHPQFAPPNLDCTPISMLNHSGVGAF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 RPFASTEDRESYQSAFTPAKRLKNCHDTESPHLRFSDADGKEYDFGTQLPSSSPGSLKVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RPFASTEDRESYQSAFTPAKRLKNCHDTESPHLRFSDADGKEYDFGTQLPSSSPGSLKVD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 DTGKKIFAVSGLISDREASSSPEDRNDRCKKKAAALFDSQAPICPICQVLLRPSELQEHM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DTGKKIFAVSGLISDREASSSPEDRNDRCKKKAAALFDSQAPICPICQVLLRPSELQEHM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 EQELEQLAQLPSSKNSLLKDAMAPGTPKSLLLSASIKREGESPTASPHSSATDDLHHSDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EQELEQLAQLPSSKNSLLKDAMAPGTPKSLLLSASIKREGESPTASPHSSATDDLHHSDR
250 260 270 280 290 300
310 320 330
pF1KE3 YQTFLRVRANRQTRLNARIGKMKRRKQDEGQ--------------------------REG
::::::::::::::::::::::::::::::: :::
XP_011 YQTFLRVRANRQTRLNARIGKMKRRKQDEGQVCPLCNRPLAGSEQEMSRHVEHCLSKREG
310 320 330 340 350 360
340 350 360 370 380 390
pF1KE3 SCMAEDDAVDIEHENNNRFEEYEWCGQKRIRATTLLEGGFRGSGFIMCSGKENPDSDADL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SCMAEDDAVDIEHENNNRFEEYEWCGQKRIRATTLLEGGFRGSGFIMCSGKENPDSDADL
370 380 390 400 410 420
400 410 420 430 440 450
pF1KE3 DVDGDDTLEYGKPQYTEADVIPCTGEEPGEAKEREALRGAVLNGGPPSTRITPEFSKWAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DVDGDDTLEYGKPQYTEADVIPCTGEEPGEAKEREALRGAVLNGGPPSTRITPEFSKWAS
430 440 450 460 470 480
460 470 480 490 500 510
pF1KE3 DEMPSTSNGESSKQEAMQKTCKNSDIEKITEDSAVTTFEALKARVRELERQLSRGDRYKC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DEMPSTSNGESSKQEAMQKTCKNSDIEKITEDSAVTTFEALKARVRELERQLSRGDRYKC
490 500 510 520 530 540
520 530 540 550 560
pF1KE3 LICMDSYSMPLTSIQCWHVHCEECWLRTLGAKKLCPQCNTITAPGDLRRIYL
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LICMDSYSMPLTSIQCWHVHCEECWLRTLGAKKLCPQCNTITAPGDLRRIYL
550 560 570 580 590
>>XP_005271050 (OMIM: 616136) PREDICTED: E3 ubiquitin-pr (592 aa)
initn: 2233 init1: 2233 opt: 2235 Z-score: 2100.2 bits: 398.5 E(85289): 3e-110
Smith-Waterman score: 3804; 95.6% identity (95.6% similar) in 592 aa overlap (1-566:1-592)
10 20 30 40 50 60
pF1KE3 MDLHRAAFKMENSSYLPNPLASPALMVLASTAEASRDASIPCQQPRPFGVPVSVDKDVHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MDLHRAAFKMENSSYLPNPLASPALMVLASTAEASRDASIPCQQPRPFGVPVSVDKDVHI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 PFTNGSYTFASMYHRQGGVPGTFANRDFPPSLLHLHPQFAPPNLDCTPISMLNHSGVGAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PFTNGSYTFASMYHRQGGVPGTFANRDFPPSLLHLHPQFAPPNLDCTPISMLNHSGVGAF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 RPFASTEDRESYQSAFTPAKRLKNCHDTESPHLRFSDADGKEYDFGTQLPSSSPGSLKVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RPFASTEDRESYQSAFTPAKRLKNCHDTESPHLRFSDADGKEYDFGTQLPSSSPGSLKVD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 DTGKKIFAVSGLISDREASSSPEDRNDRCKKKAAALFDSQAPICPICQVLLRPSELQEHM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DTGKKIFAVSGLISDREASSSPEDRNDRCKKKAAALFDSQAPICPICQVLLRPSELQEHM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 EQELEQLAQLPSSKNSLLKDAMAPGTPKSLLLSASIKREGESPTASPHSSATDDLHHSDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EQELEQLAQLPSSKNSLLKDAMAPGTPKSLLLSASIKREGESPTASPHSSATDDLHHSDR
250 260 270 280 290 300
310 320 330
pF1KE3 YQTFLRVRANRQTRLNARIGKMKRRKQDEGQ--------------------------REG
::::::::::::::::::::::::::::::: :::
XP_005 YQTFLRVRANRQTRLNARIGKMKRRKQDEGQVCPLCNRPLAGSEQEMSRHVEHCLSKREG
310 320 330 340 350 360
340 350 360 370 380 390
pF1KE3 SCMAEDDAVDIEHENNNRFEEYEWCGQKRIRATTLLEGGFRGSGFIMCSGKENPDSDADL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SCMAEDDAVDIEHENNNRFEEYEWCGQKRIRATTLLEGGFRGSGFIMCSGKENPDSDADL
370 380 390 400 410 420
400 410 420 430 440 450
pF1KE3 DVDGDDTLEYGKPQYTEADVIPCTGEEPGEAKEREALRGAVLNGGPPSTRITPEFSKWAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DVDGDDTLEYGKPQYTEADVIPCTGEEPGEAKEREALRGAVLNGGPPSTRITPEFSKWAS
430 440 450 460 470 480
460 470 480 490 500 510
pF1KE3 DEMPSTSNGESSKQEAMQKTCKNSDIEKITEDSAVTTFEALKARVRELERQLSRGDRYKC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DEMPSTSNGESSKQEAMQKTCKNSDIEKITEDSAVTTFEALKARVRELERQLSRGDRYKC
490 500 510 520 530 540
520 530 540 550 560
pF1KE3 LICMDSYSMPLTSIQCWHVHCEECWLRTLGAKKLCPQCNTITAPGDLRRIYL
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LICMDSYSMPLTSIQCWHVHCEECWLRTLGAKKLCPQCNTITAPGDLRRIYL
550 560 570 580 590
>>XP_011540002 (OMIM: 616136) PREDICTED: E3 ubiquitin-pr (592 aa)
initn: 2233 init1: 2233 opt: 2235 Z-score: 2100.2 bits: 398.5 E(85289): 3e-110
Smith-Waterman score: 3804; 95.6% identity (95.6% similar) in 592 aa overlap (1-566:1-592)
10 20 30 40 50 60
pF1KE3 MDLHRAAFKMENSSYLPNPLASPALMVLASTAEASRDASIPCQQPRPFGVPVSVDKDVHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MDLHRAAFKMENSSYLPNPLASPALMVLASTAEASRDASIPCQQPRPFGVPVSVDKDVHI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 PFTNGSYTFASMYHRQGGVPGTFANRDFPPSLLHLHPQFAPPNLDCTPISMLNHSGVGAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PFTNGSYTFASMYHRQGGVPGTFANRDFPPSLLHLHPQFAPPNLDCTPISMLNHSGVGAF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 RPFASTEDRESYQSAFTPAKRLKNCHDTESPHLRFSDADGKEYDFGTQLPSSSPGSLKVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RPFASTEDRESYQSAFTPAKRLKNCHDTESPHLRFSDADGKEYDFGTQLPSSSPGSLKVD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 DTGKKIFAVSGLISDREASSSPEDRNDRCKKKAAALFDSQAPICPICQVLLRPSELQEHM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DTGKKIFAVSGLISDREASSSPEDRNDRCKKKAAALFDSQAPICPICQVLLRPSELQEHM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 EQELEQLAQLPSSKNSLLKDAMAPGTPKSLLLSASIKREGESPTASPHSSATDDLHHSDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EQELEQLAQLPSSKNSLLKDAMAPGTPKSLLLSASIKREGESPTASPHSSATDDLHHSDR
250 260 270 280 290 300
310 320 330
pF1KE3 YQTFLRVRANRQTRLNARIGKMKRRKQDEGQ--------------------------REG
::::::::::::::::::::::::::::::: :::
XP_011 YQTFLRVRANRQTRLNARIGKMKRRKQDEGQVCPLCNRPLAGSEQEMSRHVEHCLSKREG
310 320 330 340 350 360
340 350 360 370 380 390
pF1KE3 SCMAEDDAVDIEHENNNRFEEYEWCGQKRIRATTLLEGGFRGSGFIMCSGKENPDSDADL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SCMAEDDAVDIEHENNNRFEEYEWCGQKRIRATTLLEGGFRGSGFIMCSGKENPDSDADL
370 380 390 400 410 420
400 410 420 430 440 450
pF1KE3 DVDGDDTLEYGKPQYTEADVIPCTGEEPGEAKEREALRGAVLNGGPPSTRITPEFSKWAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DVDGDDTLEYGKPQYTEADVIPCTGEEPGEAKEREALRGAVLNGGPPSTRITPEFSKWAS
430 440 450 460 470 480
460 470 480 490 500 510
pF1KE3 DEMPSTSNGESSKQEAMQKTCKNSDIEKITEDSAVTTFEALKARVRELERQLSRGDRYKC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DEMPSTSNGESSKQEAMQKTCKNSDIEKITEDSAVTTFEALKARVRELERQLSRGDRYKC
490 500 510 520 530 540
520 530 540 550 560
pF1KE3 LICMDSYSMPLTSIQCWHVHCEECWLRTLGAKKLCPQCNTITAPGDLRRIYL
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LICMDSYSMPLTSIQCWHVHCEECWLRTLGAKKLCPQCNTITAPGDLRRIYL
550 560 570 580 590
>>XP_005271049 (OMIM: 616136) PREDICTED: E3 ubiquitin-pr (592 aa)
initn: 2233 init1: 2233 opt: 2235 Z-score: 2100.2 bits: 398.5 E(85289): 3e-110
Smith-Waterman score: 3804; 95.6% identity (95.6% similar) in 592 aa overlap (1-566:1-592)
10 20 30 40 50 60
pF1KE3 MDLHRAAFKMENSSYLPNPLASPALMVLASTAEASRDASIPCQQPRPFGVPVSVDKDVHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MDLHRAAFKMENSSYLPNPLASPALMVLASTAEASRDASIPCQQPRPFGVPVSVDKDVHI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 PFTNGSYTFASMYHRQGGVPGTFANRDFPPSLLHLHPQFAPPNLDCTPISMLNHSGVGAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PFTNGSYTFASMYHRQGGVPGTFANRDFPPSLLHLHPQFAPPNLDCTPISMLNHSGVGAF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 RPFASTEDRESYQSAFTPAKRLKNCHDTESPHLRFSDADGKEYDFGTQLPSSSPGSLKVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RPFASTEDRESYQSAFTPAKRLKNCHDTESPHLRFSDADGKEYDFGTQLPSSSPGSLKVD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 DTGKKIFAVSGLISDREASSSPEDRNDRCKKKAAALFDSQAPICPICQVLLRPSELQEHM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DTGKKIFAVSGLISDREASSSPEDRNDRCKKKAAALFDSQAPICPICQVLLRPSELQEHM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 EQELEQLAQLPSSKNSLLKDAMAPGTPKSLLLSASIKREGESPTASPHSSATDDLHHSDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EQELEQLAQLPSSKNSLLKDAMAPGTPKSLLLSASIKREGESPTASPHSSATDDLHHSDR
250 260 270 280 290 300
310 320 330
pF1KE3 YQTFLRVRANRQTRLNARIGKMKRRKQDEGQ--------------------------REG
::::::::::::::::::::::::::::::: :::
XP_005 YQTFLRVRANRQTRLNARIGKMKRRKQDEGQVCPLCNRPLAGSEQEMSRHVEHCLSKREG
310 320 330 340 350 360
340 350 360 370 380 390
pF1KE3 SCMAEDDAVDIEHENNNRFEEYEWCGQKRIRATTLLEGGFRGSGFIMCSGKENPDSDADL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SCMAEDDAVDIEHENNNRFEEYEWCGQKRIRATTLLEGGFRGSGFIMCSGKENPDSDADL
370 380 390 400 410 420
400 410 420 430 440 450
pF1KE3 DVDGDDTLEYGKPQYTEADVIPCTGEEPGEAKEREALRGAVLNGGPPSTRITPEFSKWAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DVDGDDTLEYGKPQYTEADVIPCTGEEPGEAKEREALRGAVLNGGPPSTRITPEFSKWAS
430 440 450 460 470 480
460 470 480 490 500 510
pF1KE3 DEMPSTSNGESSKQEAMQKTCKNSDIEKITEDSAVTTFEALKARVRELERQLSRGDRYKC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DEMPSTSNGESSKQEAMQKTCKNSDIEKITEDSAVTTFEALKARVRELERQLSRGDRYKC
490 500 510 520 530 540
520 530 540 550 560
pF1KE3 LICMDSYSMPLTSIQCWHVHCEECWLRTLGAKKLCPQCNTITAPGDLRRIYL
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LICMDSYSMPLTSIQCWHVHCEECWLRTLGAKKLCPQCNTITAPGDLRRIYL
550 560 570 580 590
>>XP_011540001 (OMIM: 616136) PREDICTED: E3 ubiquitin-pr (592 aa)
initn: 2233 init1: 2233 opt: 2235 Z-score: 2100.2 bits: 398.5 E(85289): 3e-110
Smith-Waterman score: 3804; 95.6% identity (95.6% similar) in 592 aa overlap (1-566:1-592)
10 20 30 40 50 60
pF1KE3 MDLHRAAFKMENSSYLPNPLASPALMVLASTAEASRDASIPCQQPRPFGVPVSVDKDVHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MDLHRAAFKMENSSYLPNPLASPALMVLASTAEASRDASIPCQQPRPFGVPVSVDKDVHI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 PFTNGSYTFASMYHRQGGVPGTFANRDFPPSLLHLHPQFAPPNLDCTPISMLNHSGVGAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PFTNGSYTFASMYHRQGGVPGTFANRDFPPSLLHLHPQFAPPNLDCTPISMLNHSGVGAF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 RPFASTEDRESYQSAFTPAKRLKNCHDTESPHLRFSDADGKEYDFGTQLPSSSPGSLKVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RPFASTEDRESYQSAFTPAKRLKNCHDTESPHLRFSDADGKEYDFGTQLPSSSPGSLKVD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 DTGKKIFAVSGLISDREASSSPEDRNDRCKKKAAALFDSQAPICPICQVLLRPSELQEHM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DTGKKIFAVSGLISDREASSSPEDRNDRCKKKAAALFDSQAPICPICQVLLRPSELQEHM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 EQELEQLAQLPSSKNSLLKDAMAPGTPKSLLLSASIKREGESPTASPHSSATDDLHHSDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EQELEQLAQLPSSKNSLLKDAMAPGTPKSLLLSASIKREGESPTASPHSSATDDLHHSDR
250 260 270 280 290 300
310 320 330
pF1KE3 YQTFLRVRANRQTRLNARIGKMKRRKQDEGQ--------------------------REG
::::::::::::::::::::::::::::::: :::
XP_011 YQTFLRVRANRQTRLNARIGKMKRRKQDEGQVCPLCNRPLAGSEQEMSRHVEHCLSKREG
310 320 330 340 350 360
340 350 360 370 380 390
pF1KE3 SCMAEDDAVDIEHENNNRFEEYEWCGQKRIRATTLLEGGFRGSGFIMCSGKENPDSDADL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SCMAEDDAVDIEHENNNRFEEYEWCGQKRIRATTLLEGGFRGSGFIMCSGKENPDSDADL
370 380 390 400 410 420
400 410 420 430 440 450
pF1KE3 DVDGDDTLEYGKPQYTEADVIPCTGEEPGEAKEREALRGAVLNGGPPSTRITPEFSKWAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DVDGDDTLEYGKPQYTEADVIPCTGEEPGEAKEREALRGAVLNGGPPSTRITPEFSKWAS
430 440 450 460 470 480
460 470 480 490 500 510
pF1KE3 DEMPSTSNGESSKQEAMQKTCKNSDIEKITEDSAVTTFEALKARVRELERQLSRGDRYKC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DEMPSTSNGESSKQEAMQKTCKNSDIEKITEDSAVTTFEALKARVRELERQLSRGDRYKC
490 500 510 520 530 540
520 530 540 550 560
pF1KE3 LICMDSYSMPLTSIQCWHVHCEECWLRTLGAKKLCPQCNTITAPGDLRRIYL
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LICMDSYSMPLTSIQCWHVHCEECWLRTLGAKKLCPQCNTITAPGDLRRIYL
550 560 570 580 590
566 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 23:33:42 2016 done: Sat Nov 5 23:33:44 2016
Total Scan time: 9.820 Total Display time: 0.130
Function used was FASTA [36.3.4 Apr, 2011]