FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3243, 566 aa
  1>>>pF1KE3243 566 - 566 aa - 566 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3534+/-0.00083; mu= 15.2205+/- 0.050
 mean_var=106.7907+/-21.755, 0's: 0 Z-trim(110.5): 42  B-trim: 110 in 1/49
 Lambda= 0.124110
 statistics sampled from 11643 (11670) to 11643 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.723), E-opt: 0.2 (0.358), width:  16
 Scan time:  3.380

The best scores are:                                      opt bits E(32554)
CCDS510.1 RNF220 gene_id:55182|Hs108|chr1          ( 566) 3866 702.9 2.7e-202


>>CCDS510.1 RNF220 gene_id:55182|Hs108|chr1               (566 aa)
 initn: 3866 init1: 3866 opt: 3866  Z-score: 3745.4  bits: 702.9 E(32554): 2.7e-202
Smith-Waterman score: 3866; 100.0% identity (100.0% similar) in 566 aa overlap (1-566:1-566)

               10        20        30        40        50        60
pF1KE3 MDLHRAAFKMENSSYLPNPLASPALMVLASTAEASRDASIPCQQPRPFGVPVSVDKDVHI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 MDLHRAAFKMENSSYLPNPLASPALMVLASTAEASRDASIPCQQPRPFGVPVSVDKDVHI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 PFTNGSYTFASMYHRQGGVPGTFANRDFPPSLLHLHPQFAPPNLDCTPISMLNHSGVGAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 PFTNGSYTFASMYHRQGGVPGTFANRDFPPSLLHLHPQFAPPNLDCTPISMLNHSGVGAF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 RPFASTEDRESYQSAFTPAKRLKNCHDTESPHLRFSDADGKEYDFGTQLPSSSPGSLKVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 RPFASTEDRESYQSAFTPAKRLKNCHDTESPHLRFSDADGKEYDFGTQLPSSSPGSLKVD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 DTGKKIFAVSGLISDREASSSPEDRNDRCKKKAAALFDSQAPICPICQVLLRPSELQEHM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 DTGKKIFAVSGLISDREASSSPEDRNDRCKKKAAALFDSQAPICPICQVLLRPSELQEHM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 EQELEQLAQLPSSKNSLLKDAMAPGTPKSLLLSASIKREGESPTASPHSSATDDLHHSDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 EQELEQLAQLPSSKNSLLKDAMAPGTPKSLLLSASIKREGESPTASPHSSATDDLHHSDR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 YQTFLRVRANRQTRLNARIGKMKRRKQDEGQREGSCMAEDDAVDIEHENNNRFEEYEWCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 YQTFLRVRANRQTRLNARIGKMKRRKQDEGQREGSCMAEDDAVDIEHENNNRFEEYEWCG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 QKRIRATTLLEGGFRGSGFIMCSGKENPDSDADLDVDGDDTLEYGKPQYTEADVIPCTGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 QKRIRATTLLEGGFRGSGFIMCSGKENPDSDADLDVDGDDTLEYGKPQYTEADVIPCTGE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE3 EPGEAKEREALRGAVLNGGPPSTRITPEFSKWASDEMPSTSNGESSKQEAMQKTCKNSDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 EPGEAKEREALRGAVLNGGPPSTRITPEFSKWASDEMPSTSNGESSKQEAMQKTCKNSDI
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE3 EKITEDSAVTTFEALKARVRELERQLSRGDRYKCLICMDSYSMPLTSIQCWHVHCEECWL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 EKITEDSAVTTFEALKARVRELERQLSRGDRYKCLICMDSYSMPLTSIQCWHVHCEECWL
              490       500       510       520       530       540

              550       560      
pF1KE3 RTLGAKKLCPQCNTITAPGDLRRIYL
       ::::::::::::::::::::::::::
CCDS51 RTLGAKKLCPQCNTITAPGDLRRIYL
              550       560      




566 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 23:33:42 2016 done: Sat Nov  5 23:33:42 2016
 Total Scan time:  3.380 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]