FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6275, 205 aa 1>>>pF1KE6275 205 - 205 aa - 205 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.6725+/-0.000422; mu= 16.5542+/- 0.026 mean_var=59.6985+/-12.494, 0's: 0 Z-trim(109.4): 34 B-trim: 0 in 0/51 Lambda= 0.165994 statistics sampled from 17515 (17538) to 17515 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.547), E-opt: 0.2 (0.206), width: 16 Scan time: 4.040 The best scores are: opt bits E(85289) NP_004038 (OMIM: 603717) V-type proton ATPase 21 k ( 205) 1339 329.2 2.8e-90 NP_001281262 (OMIM: 603717) V-type proton ATPase 2 ( 261) 1288 317.1 1.6e-86 NP_001034546 (OMIM: 603717) V-type proton ATPase 2 ( 158) 1013 251.1 7.3e-67 NP_001685 (OMIM: 108745) V-type proton ATPase 16 k ( 155) 207 58.0 9.2e-09 NP_001185498 (OMIM: 108745) V-type proton ATPase 1 ( 155) 207 58.0 9.2e-09 >>NP_004038 (OMIM: 603717) V-type proton ATPase 21 kDa p (205 aa) initn: 1339 init1: 1339 opt: 1339 Z-score: 1741.7 bits: 329.2 E(85289): 2.8e-90 Smith-Waterman score: 1339; 100.0% identity (100.0% similar) in 205 aa overlap (1-205:1-205) 10 20 30 40 50 60 pF1KE6 MTGLALLYSGVFVAFWACALAVGVCYTIFDLGFRFDVAWFLTETSPFMWSNLGIGLAISL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MTGLALLYSGVFVAFWACALAVGVCYTIFDLGFRFDVAWFLTETSPFMWSNLGIGLAISL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 SVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 SVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFSA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 TDPKAIGHRNYHAGYSMFGAGLTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 TDPKAIGHRNYHAGYSMFGAGLTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVE 130 140 150 160 170 180 190 200 pF1KE6 IFGSAIGLFGVIVAILQTSRVKMGD ::::::::::::::::::::::::: NP_004 IFGSAIGLFGVIVAILQTSRVKMGD 190 200 >>NP_001281262 (OMIM: 603717) V-type proton ATPase 21 kD (261 aa) initn: 1288 init1: 1288 opt: 1288 Z-score: 1674.3 bits: 317.1 E(85289): 1.6e-86 Smith-Waterman score: 1288; 100.0% identity (100.0% similar) in 197 aa overlap (1-197:1-197) 10 20 30 40 50 60 pF1KE6 MTGLALLYSGVFVAFWACALAVGVCYTIFDLGFRFDVAWFLTETSPFMWSNLGIGLAISL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MTGLALLYSGVFVAFWACALAVGVCYTIFDLGFRFDVAWFLTETSPFMWSNLGIGLAISL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 SVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFSA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 TDPKAIGHRNYHAGYSMFGAGLTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TDPKAIGHRNYHAGYSMFGAGLTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVE 130 140 150 160 170 180 190 200 pF1KE6 IFGSAIGLFGVIVAILQTSRVKMGD ::::::::::::::::: NP_001 IFGSAIGLFGVIVAILQVMNPLGKPLCPCPQPSLTLLLEKLKCSPSLPITIDSPKQLPPP 190 200 210 220 230 240 >>NP_001034546 (OMIM: 603717) V-type proton ATPase 21 kD (158 aa) initn: 1013 init1: 1013 opt: 1013 Z-score: 1321.4 bits: 251.1 E(85289): 7.3e-67 Smith-Waterman score: 1013; 100.0% identity (100.0% similar) in 158 aa overlap (48-205:1-158) 20 30 40 50 60 70 pF1KE6 CALAVGVCYTIFDLGFRFDVAWFLTETSPFMWSNLGIGLAISLSVVGAAWGIYITGSSII :::::::::::::::::::::::::::::: NP_001 MWSNLGIGLAISLSVVGAAWGIYITGSSII 10 20 30 80 90 100 110 120 130 pF1KE6 GGGVKAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFSATDPKAIGHRNYHAGYSM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GGGVKAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFSATDPKAIGHRNYHAGYSM 40 50 60 70 80 90 140 150 160 170 180 190 pF1KE6 FGAGLTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFGSAIGLFGVIVAILQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 FGAGLTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFGSAIGLFGVIVAILQ 100 110 120 130 140 150 200 pF1KE6 TSRVKMGD :::::::: NP_001 TSRVKMGD >>NP_001685 (OMIM: 108745) V-type proton ATPase 16 kDa p (155 aa) initn: 417 init1: 192 opt: 207 Z-score: 278.3 bits: 58.0 E(85289): 9.2e-09 Smith-Waterman score: 299; 32.9% identity (71.1% similar) in 149 aa overlap (52-200:17-155) 30 40 50 60 70 80 pF1KE6 VGVCYTIFDLGFRFDVAWFLTETSPFMWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGV .: . :. .:..:::.: .:..: . .: NP_001 MSESKSGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSV 10 20 30 40 90 100 110 120 130 140 pF1KE6 KAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFSATDPKAIGHRNYHAGYSMFGAG :. :... ... .::::...:..:.: : .: .. . .. ..::: NP_001 MRPEQIMKSIIPVVMAGIIAIYGLVVAVLIAN-----SLNDDISL-----YKSFLQLGAG 50 60 70 80 90 150 160 170 180 190 200 pF1KE6 LTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFGSAIGLFGVIVAILQTSRV :.::::.: : .::::.... . ::.: ::: .... ::. ..::.:.:::.. ... NP_001 LSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 100 110 120 130 140 150 pF1KE6 KMGD >>NP_001185498 (OMIM: 108745) V-type proton ATPase 16 kD (155 aa) initn: 417 init1: 192 opt: 207 Z-score: 278.3 bits: 58.0 E(85289): 9.2e-09 Smith-Waterman score: 299; 32.9% identity (71.1% similar) in 149 aa overlap (52-200:17-155) 30 40 50 60 70 80 pF1KE6 VGVCYTIFDLGFRFDVAWFLTETSPFMWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGV .: . :. .:..:::.: .:..: . .: NP_001 MSESKSGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSV 10 20 30 40 90 100 110 120 130 140 pF1KE6 KAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFSATDPKAIGHRNYHAGYSMFGAG :. :... ... .::::...:..:.: : .: .. . .. ..::: NP_001 MRPEQIMKSIIPVVMAGIIAIYGLVVAVLIAN-----SLNDDISL-----YKSFLQLGAG 50 60 70 80 90 150 160 170 180 190 200 pF1KE6 LTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFGSAIGLFGVIVAILQTSRV :.::::.: : .::::.... . ::.: ::: .... ::. ..::.:.:::.. ... NP_001 LSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 100 110 120 130 140 150 pF1KE6 KMGD 205 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 11:42:09 2016 done: Tue Nov 8 11:42:10 2016 Total Scan time: 4.040 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]