FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6275, 205 aa 1>>>pF1KE6275 205 - 205 aa - 205 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1838+/-0.00104; mu= 13.5612+/- 0.061 mean_var=60.7508+/-12.689, 0's: 0 Z-trim(103.1): 30 B-trim: 0 in 0/47 Lambda= 0.164550 statistics sampled from 7250 (7261) to 7250 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.574), E-opt: 0.2 (0.223), width: 16 Scan time: 1.230 The best scores are: opt bits E(32554) CCDS505.1 ATP6V0B gene_id:533|Hs108|chr1 ( 205) 1339 326.5 7.3e-90 CCDS72772.1 ATP6V0B gene_id:533|Hs108|chr1 ( 261) 1288 314.4 3.9e-86 CCDS41315.1 ATP6V0B gene_id:533|Hs108|chr1 ( 158) 1013 249.0 1.2e-66 >>CCDS505.1 ATP6V0B gene_id:533|Hs108|chr1 (205 aa) initn: 1339 init1: 1339 opt: 1339 Z-score: 1726.8 bits: 326.5 E(32554): 7.3e-90 Smith-Waterman score: 1339; 100.0% identity (100.0% similar) in 205 aa overlap (1-205:1-205) 10 20 30 40 50 60 pF1KE6 MTGLALLYSGVFVAFWACALAVGVCYTIFDLGFRFDVAWFLTETSPFMWSNLGIGLAISL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS50 MTGLALLYSGVFVAFWACALAVGVCYTIFDLGFRFDVAWFLTETSPFMWSNLGIGLAISL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 SVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS50 SVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFSA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 TDPKAIGHRNYHAGYSMFGAGLTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS50 TDPKAIGHRNYHAGYSMFGAGLTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVE 130 140 150 160 170 180 190 200 pF1KE6 IFGSAIGLFGVIVAILQTSRVKMGD ::::::::::::::::::::::::: CCDS50 IFGSAIGLFGVIVAILQTSRVKMGD 190 200 >>CCDS72772.1 ATP6V0B gene_id:533|Hs108|chr1 (261 aa) initn: 1288 init1: 1288 opt: 1288 Z-score: 1659.8 bits: 314.4 E(32554): 3.9e-86 Smith-Waterman score: 1288; 100.0% identity (100.0% similar) in 197 aa overlap (1-197:1-197) 10 20 30 40 50 60 pF1KE6 MTGLALLYSGVFVAFWACALAVGVCYTIFDLGFRFDVAWFLTETSPFMWSNLGIGLAISL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 MTGLALLYSGVFVAFWACALAVGVCYTIFDLGFRFDVAWFLTETSPFMWSNLGIGLAISL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 SVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 SVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFSA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 TDPKAIGHRNYHAGYSMFGAGLTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 TDPKAIGHRNYHAGYSMFGAGLTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVE 130 140 150 160 170 180 190 200 pF1KE6 IFGSAIGLFGVIVAILQTSRVKMGD ::::::::::::::::: CCDS72 IFGSAIGLFGVIVAILQVMNPLGKPLCPCPQPSLTLLLEKLKCSPSLPITIDSPKQLPPP 190 200 210 220 230 240 >>CCDS41315.1 ATP6V0B gene_id:533|Hs108|chr1 (158 aa) initn: 1013 init1: 1013 opt: 1013 Z-score: 1310.3 bits: 249.0 E(32554): 1.2e-66 Smith-Waterman score: 1013; 100.0% identity (100.0% similar) in 158 aa overlap (48-205:1-158) 20 30 40 50 60 70 pF1KE6 CALAVGVCYTIFDLGFRFDVAWFLTETSPFMWSNLGIGLAISLSVVGAAWGIYITGSSII :::::::::::::::::::::::::::::: CCDS41 MWSNLGIGLAISLSVVGAAWGIYITGSSII 10 20 30 80 90 100 110 120 130 pF1KE6 GGGVKAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFSATDPKAIGHRNYHAGYSM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 GGGVKAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFSATDPKAIGHRNYHAGYSM 40 50 60 70 80 90 140 150 160 170 180 190 pF1KE6 FGAGLTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFGSAIGLFGVIVAILQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 FGAGLTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFGSAIGLFGVIVAILQ 100 110 120 130 140 150 200 pF1KE6 TSRVKMGD :::::::: CCDS41 TSRVKMGD 205 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 11:42:08 2016 done: Tue Nov 8 11:42:09 2016 Total Scan time: 1.230 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]