FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7080, 123 aa
  1>>>pF1KB7080 123 - 123 aa - 123 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3041+/-0.000752; mu= 9.2861+/- 0.045
 mean_var=48.9515+/- 9.839, 0's: 0 Z-trim(105.7): 15  B-trim: 66 in 2/49
 Lambda= 0.183312
 statistics sampled from 8559 (8572) to 8559 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.669), E-opt: 0.2 (0.263), width:  16
 Scan time:  1.530

The best scores are:                                      opt bits E(32554)
CCDS408.1 LSM10 gene_id:84967|Hs108|chr1           ( 123)  820 224.3 1.5e-59


>>CCDS408.1 LSM10 gene_id:84967|Hs108|chr1                (123 aa)
 initn: 820 init1: 820 opt: 820  Z-score: 1182.7  bits: 224.3 E(32554): 1.5e-59
Smith-Waterman score: 820; 100.0% identity (100.0% similar) in 123 aa overlap (1-123:1-123)

               10        20        30        40        50        60
pF1KB7 MAVSHSVKERTISENSLIILLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 MAVSHSVKERTISENSLIILLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 DRWGHQVKLDDLFVTGRNVRYVHIPDDVNITSTIEQQLQIIHRVRNFGGKGQGRWEFPPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 DRWGHQVKLDDLFVTGRNVRYVHIPDDVNITSTIEQQLQIIHRVRNFGGKGQGRWEFPPK
               70        80        90       100       110       120

          
pF1KB7 NCK
       :::
CCDS40 NCK
          




123 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 19:22:53 2016 done: Sun Nov  6 19:22:53 2016
 Total Scan time:  1.530 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]