Result of FASTA (omim) for
pFN21AE1247
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1247, 482 aa
1>>>pF1KE1247 482 - 482 aa - 482 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 12.4266+/-0.000579; mu= -14.7048+/- 0.036
mean_var=568.6296+/-117.427, 0's: 0 Z-trim(118.8): 39 B-trim: 72 in 1/57
Lambda= 0.053785
statistics sampled from 32193 (32230) to 32193 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.706), E-opt: 0.2 (0.378), width: 16
Scan time: 11.310
The best scores are: opt bits E(85289)
NP_110413 (OMIM: 611750) syncoilin isoform 1 [Homo ( 482) 3069 253.4 1e-66
NP_001155180 (OMIM: 611750) syncoilin isoform 2 [H ( 476) 2890 239.5 1.6e-62
>>NP_110413 (OMIM: 611750) syncoilin isoform 1 [Homo sap (482 aa)
initn: 3069 init1: 3069 opt: 3069 Z-score: 1318.6 bits: 253.4 E(85289): 1e-66
Smith-Waterman score: 3069; 99.8% identity (100.0% similar) in 482 aa overlap (1-482:1-482)
10 20 30 40 50 60
pF1KE1 MASPEPRRGGDGAAQAARKTRVEANSPLPKNSGSLNEAEALNPEVTLSSEGSLNLEDILY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_110 MASPEPRRGGDGAAQAARKTRVEANSPLPKNSGSLNEAEALNPEVTLSSEGSLNLEDILY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 LEDTGDLDETLYVQETEKAEEALYIEEAMQPDEALHVEEPGNPEETVCVEETTEPDRIQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_110 LEDTGDLDETLYVQETEKAEEALYIEEAMQPDEALHVEEPGNPEETVCVEETTEPDRIQF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 VEGPVEPGKPTSPEHVVYEGETVTRAEKSNPEESLRAEQSPSVEENLSIEDLELLEGRFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_110 VEGPVEPGKPTSPEHVVYEGETVTRAEKSNPEESLRAEQSPSVEENLSIEDLELLEGRFQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 QCVQAVAQLEEERDQLIHELVLLREPALQEVQQVHQDILAAYKLHAQAELERDGLREEIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_110 QCVQAVAQLEEERDQLIHELVLLREPALQEVQQVHQDILAAYKLHAQAELERDGLREEIR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 LVKQKLFKVTKECVAYQYQLECRQQDVAQFADFQEVLTTRATQLSEELAQLRDAYQKQKE
:::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::
NP_110 LVKQKLFKVTKECVAYQYQLECRQQDVAQFADFREVLTTRATQLSEELAQLRDAYQKQKE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 QLRQQLEAPPSQRDGHFLQESRRLSAQFENLMAESRQDLEEEYEPQFLRLLERKEAGTKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_110 QLRQQLEAPPSQRDGHFLQESRRLSAQFENLMAESRQDLEEEYEPQFLRLLERKEAGTKA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 LQRTQAEIQEMKEALRPLQAEARQLRLQNRNLEDQIALVRQKRDEEVQQYREQLEEMEER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_110 LQRTQAEIQEMKEALRPLQAEARQLRLQNRNLEDQIALVRQKRDEEVQQYREQLEEMEER
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE1 QRQLRNGVQLQQQKNKEMEQLRLSLAEELSTYKAMLLPKSLEQADAPTSQAGGMETQSQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_110 QRQLRNGVQLQQQKNKEMEQLRLSLAEELSTYKAMLLPKSLEQADAPTSQAGGMETQSQG
430 440 450 460 470 480
pF1KE1 AV
::
NP_110 AV
>>NP_001155180 (OMIM: 611750) syncoilin isoform 2 [Homo (476 aa)
initn: 3191 init1: 2890 opt: 2890 Z-score: 1243.6 bits: 239.5 E(85289): 1.6e-62
Smith-Waterman score: 2890; 99.3% identity (99.8% similar) in 456 aa overlap (1-456:1-456)
10 20 30 40 50 60
pF1KE1 MASPEPRRGGDGAAQAARKTRVEANSPLPKNSGSLNEAEALNPEVTLSSEGSLNLEDILY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASPEPRRGGDGAAQAARKTRVEANSPLPKNSGSLNEAEALNPEVTLSSEGSLNLEDILY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 LEDTGDLDETLYVQETEKAEEALYIEEAMQPDEALHVEEPGNPEETVCVEETTEPDRIQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LEDTGDLDETLYVQETEKAEEALYIEEAMQPDEALHVEEPGNPEETVCVEETTEPDRIQF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 VEGPVEPGKPTSPEHVVYEGETVTRAEKSNPEESLRAEQSPSVEENLSIEDLELLEGRFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VEGPVEPGKPTSPEHVVYEGETVTRAEKSNPEESLRAEQSPSVEENLSIEDLELLEGRFQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 QCVQAVAQLEEERDQLIHELVLLREPALQEVQQVHQDILAAYKLHAQAELERDGLREEIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QCVQAVAQLEEERDQLIHELVLLREPALQEVQQVHQDILAAYKLHAQAELERDGLREEIR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 LVKQKLFKVTKECVAYQYQLECRQQDVAQFADFQEVLTTRATQLSEELAQLRDAYQKQKE
:::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::
NP_001 LVKQKLFKVTKECVAYQYQLECRQQDVAQFADFREVLTTRATQLSEELAQLRDAYQKQKE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 QLRQQLEAPPSQRDGHFLQESRRLSAQFENLMAESRQDLEEEYEPQFLRLLERKEAGTKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLRQQLEAPPSQRDGHFLQESRRLSAQFENLMAESRQDLEEEYEPQFLRLLERKEAGTKA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 LQRTQAEIQEMKEALRPLQAEARQLRLQNRNLEDQIALVRQKRDEEVQQYREQLEEMEER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQRTQAEIQEMKEALRPLQAEARQLRLQNRNLEDQIALVRQKRDEEVQQYREQLEEMEER
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE1 QRQLRNGVQLQQQKNKEMEQLRLSLAEELSTYKAMLLPKSLEQADAPTSQAGGMETQSQG
:::::::::::::::::::::::::::::::::. :
NP_001 QRQLRNGVQLQQQKNKEMEQLRLSLAEELSTYKGCLEIYGQICNPETAKNFLAKDH
430 440 450 460 470
pF1KE1 AV
482 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 19:24:08 2016 done: Sun Nov 6 19:24:09 2016
Total Scan time: 11.310 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]