FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1247, 482 aa 1>>>pF1KE1247 482 - 482 aa - 482 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 10.8174+/-0.00127; mu= -5.5403+/- 0.075 mean_var=417.0930+/-89.522, 0's: 0 Z-trim(111.3): 71 B-trim: 269 in 2/51 Lambda= 0.062800 statistics sampled from 12224 (12272) to 12224 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.703), E-opt: 0.2 (0.377), width: 16 Scan time: 3.540 The best scores are: opt bits E(32554) CCDS367.2 SYNC gene_id:81493|Hs108|chr1 ( 482) 3065 292.2 8.2e-79 CCDS53294.1 SYNC gene_id:81493|Hs108|chr1 ( 476) 2886 276.0 6.2e-74 >>CCDS367.2 SYNC gene_id:81493|Hs108|chr1 (482 aa) initn: 3065 init1: 3065 opt: 3065 Z-score: 1528.4 bits: 292.2 E(32554): 8.2e-79 Smith-Waterman score: 3065; 99.6% identity (100.0% similar) in 482 aa overlap (1-482:1-482) 10 20 30 40 50 60 pF1KE1 MASPEPRRGGDGAAQAARKTRVEANSPLPKNSGSLNEAEALNPEVTLSSEGSLNLEDILY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS36 MASPEPRRGGDGAAQAARKTRVEANSPLPKNSGSLNEAEALNPEVTLSSEGSLNLEDILY 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 LEDTGDLDETLYVQETEKAEEALYIEEAMQPDEALHVEEPGNPEETVCVEETTEPDRIQF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS36 LEDTGDLDETLYVQETEKAEEALYIEEAMQPDEALHVEEPGNPEETVCVEETTEPDRIQF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 VEGPVEPGKPTSPEHVVYEGETVTRAEKSNPEESLRAEQSPSVEENLSIEDLELLEGRFQ ::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::: CCDS36 VEGPVEPGKPTSPEHVVYEGETVTRAEKSNPEESLRAEQSPSMEENLSIEDLELLEGRFQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 QCVQAVAQLEEERDQLIHELVLLREPALQEVQQVHQDILAAYKLHAQAELERDGLREEIR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS36 QCVQAVAQLEEERDQLIHELVLLREPALQEVQQVHQDILAAYKLHAQAELERDGLREEIR 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 LVKQKLFKVTKECVAYQYQLECRQQDVAQFADFQEVLTTRATQLSEELAQLRDAYQKQKE :::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::: CCDS36 LVKQKLFKVTKECVAYQYQLECRQQDVAQFADFREVLTTRATQLSEELAQLRDAYQKQKE 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 QLRQQLEAPPSQRDGHFLQESRRLSAQFENLMAESRQDLEEEYEPQFLRLLERKEAGTKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS36 QLRQQLEAPPSQRDGHFLQESRRLSAQFENLMAESRQDLEEEYEPQFLRLLERKEAGTKA 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 LQRTQAEIQEMKEALRPLQAEARQLRLQNRNLEDQIALVRQKRDEEVQQYREQLEEMEER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS36 LQRTQAEIQEMKEALRPLQAEARQLRLQNRNLEDQIALVRQKRDEEVQQYREQLEEMEER 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE1 QRQLRNGVQLQQQKNKEMEQLRLSLAEELSTYKAMLLPKSLEQADAPTSQAGGMETQSQG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS36 QRQLRNGVQLQQQKNKEMEQLRLSLAEELSTYKAMLLPKSLEQADAPTSQAGGMETQSQG 430 440 450 460 470 480 pF1KE1 AV :: CCDS36 AV >>CCDS53294.1 SYNC gene_id:81493|Hs108|chr1 (476 aa) initn: 3187 init1: 2886 opt: 2886 Z-score: 1440.8 bits: 276.0 E(32554): 6.2e-74 Smith-Waterman score: 2886; 99.1% identity (99.8% similar) in 456 aa overlap (1-456:1-456) 10 20 30 40 50 60 pF1KE1 MASPEPRRGGDGAAQAARKTRVEANSPLPKNSGSLNEAEALNPEVTLSSEGSLNLEDILY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 MASPEPRRGGDGAAQAARKTRVEANSPLPKNSGSLNEAEALNPEVTLSSEGSLNLEDILY 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 LEDTGDLDETLYVQETEKAEEALYIEEAMQPDEALHVEEPGNPEETVCVEETTEPDRIQF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 LEDTGDLDETLYVQETEKAEEALYIEEAMQPDEALHVEEPGNPEETVCVEETTEPDRIQF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 VEGPVEPGKPTSPEHVVYEGETVTRAEKSNPEESLRAEQSPSVEENLSIEDLELLEGRFQ ::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::: CCDS53 VEGPVEPGKPTSPEHVVYEGETVTRAEKSNPEESLRAEQSPSMEENLSIEDLELLEGRFQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 QCVQAVAQLEEERDQLIHELVLLREPALQEVQQVHQDILAAYKLHAQAELERDGLREEIR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 QCVQAVAQLEEERDQLIHELVLLREPALQEVQQVHQDILAAYKLHAQAELERDGLREEIR 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 LVKQKLFKVTKECVAYQYQLECRQQDVAQFADFQEVLTTRATQLSEELAQLRDAYQKQKE :::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::: CCDS53 LVKQKLFKVTKECVAYQYQLECRQQDVAQFADFREVLTTRATQLSEELAQLRDAYQKQKE 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 QLRQQLEAPPSQRDGHFLQESRRLSAQFENLMAESRQDLEEEYEPQFLRLLERKEAGTKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 QLRQQLEAPPSQRDGHFLQESRRLSAQFENLMAESRQDLEEEYEPQFLRLLERKEAGTKA 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 LQRTQAEIQEMKEALRPLQAEARQLRLQNRNLEDQIALVRQKRDEEVQQYREQLEEMEER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 LQRTQAEIQEMKEALRPLQAEARQLRLQNRNLEDQIALVRQKRDEEVQQYREQLEEMEER 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE1 QRQLRNGVQLQQQKNKEMEQLRLSLAEELSTYKAMLLPKSLEQADAPTSQAGGMETQSQG :::::::::::::::::::::::::::::::::. : CCDS53 QRQLRNGVQLQQQKNKEMEQLRLSLAEELSTYKGCLEIYGQICNPETAKNFLAKDH 430 440 450 460 470 pF1KE1 AV 482 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 19:24:07 2016 done: Sun Nov 6 19:24:07 2016 Total Scan time: 3.540 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]