FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4024, 227 aa
  1>>>pF1KE4024 227 - 227 aa - 227 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0737+/-0.000801; mu= 11.6758+/- 0.048
 mean_var=126.2730+/-25.615, 0's: 0 Z-trim(112.3): 61  B-trim: 0 in 0/51
 Lambda= 0.114135
 statistics sampled from 13051 (13110) to 13051 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.757), E-opt: 0.2 (0.403), width:  16
 Scan time:  2.420

The best scores are:                                      opt bits E(32554)
CCDS199.1 RNF186 gene_id:54546|Hs108|chr1          ( 227) 1569 268.8   2e-72


>>CCDS199.1 RNF186 gene_id:54546|Hs108|chr1               (227 aa)
 initn: 1569 init1: 1569 opt: 1569  Z-score: 1413.6  bits: 268.8 E(32554): 2e-72
Smith-Waterman score: 1569; 100.0% identity (100.0% similar) in 227 aa overlap (1-227:1-227)

               10        20        30        40        50        60
pF1KE4 MACTKTLQQSQPISAGATTTTTAVAPAGGHSGSTECDLECLVCREPYSCPRLPKLLACQH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 MACTKTLQQSQPISAGATTTTTAVAPAGGHSGSTECDLECLVCREPYSCPRLPKLLACQH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 AFCAICLKLLLCVQDNTWSITCPLCRKVTAVPGGLICSLRDHEAVVGQLAQPCTEVSLCP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 AFCAICLKLLLCVQDNTWSITCPLCRKVTAVPGGLICSLRDHEAVVGQLAQPCTEVSLCP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 QGLVDPADLAAGHPSLVGEDGQDEVSANHVAARRLAAHLLLLALLIILIGPFIYPGVLRW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 QGLVDPADLAAGHPSLVGEDGQDEVSANHVAARRLAAHLLLLALLIILIGPFIYPGVLRW
              130       140       150       160       170       180

              190       200       210       220       
pF1KE4 VLTFIIALALLMSTLFCCLPSTRGSCWPSSRTLFCREQKHSHISSIA
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 VLTFIIALALLMSTLFCCLPSTRGSCWPSSRTLFCREQKHSHISSIA
              190       200       210       220       




227 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 03:25:49 2016 done: Sun Nov  6 03:25:50 2016
 Total Scan time:  2.420 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]