FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1929, 467 aa
  1>>>pF1KE1929 467 - 467 aa - 467 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7391+/-0.000937; mu= 11.1707+/- 0.056
 mean_var=110.7000+/-22.311, 0's: 0 Z-trim(108.0): 70  B-trim: 4 in 1/53
 Lambda= 0.121899
 statistics sampled from 9881 (9941) to 9881 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.67), E-opt: 0.2 (0.305), width:  16
 Scan time:  2.980

The best scores are:                                      opt bits E(32554)
CCDS184.1 IGSF21 gene_id:84966|Hs108|chr1          ( 467) 3115 558.8 4.2e-159


>>CCDS184.1 IGSF21 gene_id:84966|Hs108|chr1               (467 aa)
 initn: 3115 init1: 3115 opt: 3115  Z-score: 2969.9  bits: 558.8 E(32554): 4.2e-159
Smith-Waterman score: 3115; 100.0% identity (100.0% similar) in 467 aa overlap (1-467:1-467)

               10        20        30        40        50        60
pF1KE1 MRTAPSLRRCVCLLLAAILDLARGYLTVNIEPLPPVVAGDAVTLKCNFKTDGRMREIVWY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 MRTAPSLRRCVCLLLAAILDLARGYLTVNIEPLPPVVAGDAVTLKCNFKTDGRMREIVWY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 RVTDGGTIKQKIFTFDAMFSTNYSHMENYRKREDLVYQSTVRLPEVRISDNGPYECHVGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 RVTDGGTIKQKIFTFDAMFSTNYSHMENYRKREDLVYQSTVRLPEVRISDNGPYECHVGI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 YDRATREKVVLASGNIFLNVMAPPTSIEVVAADTPAPFSRYQAQNFTLVCIVSGGKPAPM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 YDRATREKVVLASGNIFLNVMAPPTSIEVVAADTPAPFSRYQAQNFTLVCIVSGGKPAPM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 VYFKRDGEPIDAVPLSEPPAASSGPLQDSRPFRSLLHRDLDDTKMQKSLSLLDAENRGGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 VYFKRDGEPIDAVPLSEPPAASSGPLQDSRPFRSLLHRDLDDTKMQKSLSLLDAENRGGR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 PYTERPSRGLTPDPNILLQPTTENIPETVVSREFPRWVHSAEPTYFLRHSRTPSSDGTVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 PYTERPSRGLTPDPNILLQPTTENIPETVVSREFPRWVHSAEPTYFLRHSRTPSSDGTVE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 VRALLTWTLNPQIDNEALFSCEVKHPALSMPMQAEVTLVAPKGPKIVMTPSRARVGDTVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 VRALLTWTLNPQIDNEALFSCEVKHPALSMPMQAEVTLVAPKGPKIVMTPSRARVGDTVR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 ILVHGFQNEVFPEPMFTWTRVGSRLLDGSAEFDGKELVLERVPAELNGSMYRCTAQNPLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 ILVHGFQNEVFPEPMFTWTRVGSRLLDGSAEFDGKELVLERVPAELNGSMYRCTAQNPLG
              370       380       390       400       410       420

              430       440       450       460       
pF1KE1 STDTHTRLIVFENPNIPRGTEDSNGSIGPTGARLTLVLALTVILELT
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 STDTHTRLIVFENPNIPRGTEDSNGSIGPTGARLTLVLALTVILELT
              430       440       450       460       




467 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 19:29:36 2016 done: Sun Nov  6 19:29:36 2016
 Total Scan time:  2.980 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]