FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3977, 258 aa 1>>>pF1KE3977 258 - 258 aa - 258 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.7480+/-0.000757; mu= 17.5029+/- 0.046 mean_var=69.8410+/-14.033, 0's: 0 Z-trim(109.5): 67 B-trim: 374 in 2/51 Lambda= 0.153468 statistics sampled from 10839 (10913) to 10839 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.335), width: 16 Scan time: 2.120 The best scores are: opt bits E(32554) CCDS171.1 RSG1 gene_id:79363|Hs108|chr1 ( 258) 1728 391.3 3.5e-109 >>CCDS171.1 RSG1 gene_id:79363|Hs108|chr1 (258 aa) initn: 1728 init1: 1728 opt: 1728 Z-score: 2073.7 bits: 391.3 E(32554): 3.5e-109 Smith-Waterman score: 1728; 99.6% identity (99.6% similar) in 258 aa overlap (1-258:1-258) 10 20 30 40 50 60 pF1KE3 MARPPVPGSVVVPNWHESAEGKEYLACILRKNRRRVFGLLERPVLLPPVSIDTASYKIFV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS17 MARPPVPGSVVVPNWHESAEGKEYLACILRKNRRRVFGLLERPVLLPPVSIDTASYKIFV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 SGKSGVGKTALVAKLAGLEVPVVHHGTTGIQTTVVFWPAKLQASSRVVMFRFEFWDCGES ::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::: CCDS17 SGKSGVGKTALVAKLAGLEVPVVHHETTGIQTTVVFWPAKLQASSRVVMFRFEFWDCGES 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ALKKFDHMLLACMENTDAFLFLFSFTDRASFEDLPGQLARIAGEAPGVVRMVIGSKFDQY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS17 ALKKFDHMLLACMENTDAFLFLFSFTDRASFEDLPGQLARIAGEAPGVVRMVIGSKFDQY 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 MHTDVPERDLTAFRQAWELPLLRVKSVPGRRLADGRTLDGRAGLADVAHILNGLAEQLWH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS17 MHTDVPERDLTAFRQAWELPLLRVKSVPGRRLADGRTLDGRAGLADVAHILNGLAEQLWH 190 200 210 220 230 240 250 pF1KE3 QDQVAAGLLPNPPESAPE :::::::::::::::::: CCDS17 QDQVAAGLLPNPPESAPE 250 258 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 08:24:52 2016 done: Sun Nov 6 08:24:53 2016 Total Scan time: 2.120 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]