FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1924, 461 aa 1>>>pF1KE1924 461 - 461 aa - 461 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 9.6287+/-0.000342; mu= -1.5174+/- 0.021 mean_var=216.9666+/-43.085, 0's: 0 Z-trim(122.5): 89 B-trim: 0 in 0/55 Lambda= 0.087072 statistics sampled from 40642 (40731) to 40642 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.786), E-opt: 0.2 (0.478), width: 16 Scan time: 11.660 The best scores are: opt bits E(85289) NP_001057 (OMIM: 191191) tumor necrosis factor rec ( 461) 3198 414.1 4e-115 XP_011540365 (OMIM: 191191) PREDICTED: tumor necro ( 462) 3186 412.6 1.1e-114 XP_011540362 (OMIM: 191191) PREDICTED: tumor necro ( 484) 2570 335.2 2.3e-91 XP_016857700 (OMIM: 191191) PREDICTED: tumor necro ( 491) 2133 280.3 7.9e-75 XP_016857702 (OMIM: 191191) PREDICTED: tumor necro ( 440) 1784 236.5 1.1e-61 XP_016857701 (OMIM: 191191) PREDICTED: tumor necro ( 440) 1784 236.5 1.1e-61 XP_016857704 (OMIM: 191191) PREDICTED: tumor necro ( 266) 1763 233.7 4.6e-61 XP_016857703 (OMIM: 191191) PREDICTED: tumor necro ( 289) 1135 154.8 2.8e-37 XP_005253745 (OMIM: 600979) PREDICTED: tumor necro ( 399) 487 73.5 1.2e-12 NP_003814 (OMIM: 603361) tumor necrosis factor rec ( 300) 472 71.6 3.4e-12 XP_006719046 (OMIM: 600979) PREDICTED: tumor necro ( 255) 451 68.9 1.8e-11 NP_002537 (OMIM: 239000,602643) tumor necrosis fac ( 401) 455 69.5 1.9e-11 NP_002333 (OMIM: 600979) tumor necrosis factor rec ( 435) 451 69.0 2.9e-11 XP_016883624 (OMIM: 109535,606843) PREDICTED: tumo ( 323) 446 68.3 3.5e-11 NP_001289682 (OMIM: 109535,606843) tumor necrosis ( 237) 443 67.9 3.5e-11 NP_001257916 (OMIM: 600979) tumor necrosis factor ( 416) 437 67.2 9.4e-11 XP_016883626 (OMIM: 109535,606843) PREDICTED: tumo ( 222) 429 66.1 1.1e-10 NP_001241 (OMIM: 109535,606843) tumor necrosis fac ( 277) 429 66.1 1.3e-10 NP_001309350 (OMIM: 109535,606843) tumor necrosis ( 281) 429 66.1 1.4e-10 XP_016883625 (OMIM: 109535,606843) PREDICTED: tumo ( 289) 422 65.3 2.6e-10 XP_016866233 (OMIM: 605732) PREDICTED: tumor necro ( 444) 414 64.4 7.3e-10 NP_055267 (OMIM: 605732) tumor necrosis factor rec ( 655) 414 64.5 1e-09 NP_690593 (OMIM: 109535,606843) tumor necrosis fac ( 203) 401 62.5 1.2e-09 NP_001257878 (OMIM: 174810,602080,603499,612301) t ( 263) 397 62.1 2.1e-09 NP_001257879 (OMIM: 174810,602080,603499,612301) t ( 337) 397 62.2 2.6e-09 NP_001257880 (OMIM: 174810,602080,603499,612301) t ( 299) 394 61.8 3e-09 NP_003830 (OMIM: 174810,602080,603499,612301) tumo ( 616) 397 62.3 4.2e-09 XP_011524546 (OMIM: 174810,602080,603499,612301) P ( 621) 384 60.7 1.3e-08 XP_006711082 (OMIM: 602746) PREDICTED: tumor necro ( 197) 363 57.8 3.2e-08 NP_003811 (OMIM: 602746) tumor necrosis factor rec ( 283) 366 58.2 3.3e-08 NP_001284534 (OMIM: 602746) tumor necrosis factor ( 184) 361 57.5 3.5e-08 XP_011540743 (OMIM: 153243) PREDICTED: tumor necro ( 594) 359 57.5 1.1e-07 NP_001234 (OMIM: 153243) tumor necrosis factor rec ( 595) 359 57.5 1.1e-07 XP_011527411 (OMIM: 109535,606843) PREDICTED: tumo ( 166) 304 50.3 4.7e-06 NP_001309351 (OMIM: 109535,606843) tumor necrosis ( 225) 304 50.4 6e-06 XP_005260676 (OMIM: 109535,606843) PREDICTED: tumo ( 229) 304 50.4 6.1e-06 XP_016881554 (OMIM: 174810,602080,603499,612301) P ( 566) 311 51.5 7.1e-06 NP_001265197 (OMIM: 174810,602080,603499,612301) t ( 602) 237 42.2 0.0047 >>NP_001057 (OMIM: 191191) tumor necrosis factor recepto (461 aa) initn: 3198 init1: 3198 opt: 3198 Z-score: 2187.8 bits: 414.1 E(85289): 4e-115 Smith-Waterman score: 3198; 100.0% identity (100.0% similar) in 461 aa overlap (1-461:1-461) 10 20 30 40 50 60 pF1KE1 MAPVAVWAALAVGLELWAAAHALPAQVAFTPYAPEPGSTCRLREYYDQTAQMCCSKCSPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAPVAVWAALAVGLELWAAAHALPAQVAFTPYAPEPGSTCRLREYYDQTAQMCCSKCSPG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 QHAKVFCTKTSDTVCDSCEDSTYTQLWNWVPECLSCGSRCSSDQVETQACTREQNRICTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QHAKVFCTKTSDTVCDSCEDSTYTQLWNWVPECLSCGSRCSSDQVETQACTREQNRICTC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 RPGWYCALSKQEGCRLCAPLRKCRPGFGVARPGTETSDVVCKPCAPGTFSNTTSSTDICR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RPGWYCALSKQEGCRLCAPLRKCRPGFGVARPGTETSDVVCKPCAPGTFSNTTSSTDICR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 PHQICNVVAIPGNASMDAVCTSTSPTRSMAPGAVHLPQPVSTRSQHTQPTPEPSTAPSTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PHQICNVVAIPGNASMDAVCTSTSPTRSMAPGAVHLPQPVSTRSQHTQPTPEPSTAPSTS 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 FLLPMGPSPPAEGSTGDFALPVGLIVGVTALGLLIIGVVNCVIMTQVKKKPLCLQREAKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 FLLPMGPSPPAEGSTGDFALPVGLIVGVTALGLLIIGVVNCVIMTQVKKKPLCLQREAKV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 PHLPADKARGTQGPEQQHLLITAPSSSSSSLESSASALDRRAPTRNQPQAPGVEASGAGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PHLPADKARGTQGPEQQHLLITAPSSSSSSLESSASALDRRAPTRNQPQAPGVEASGAGE 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 ARASTGSSDSSPGGHGTQVNVTCIVNVCSSSDHSSQCSSQASSTMGDTDSSPSESPKDEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ARASTGSSDSSPGGHGTQVNVTCIVNVCSSSDHSSQCSSQASSTMGDTDSSPSESPKDEQ 370 380 390 400 410 420 430 440 450 460 pF1KE1 VPFSKEECAFRSQLETPETLLGSTEEKPLPLGVPDAGMKPS ::::::::::::::::::::::::::::::::::::::::: NP_001 VPFSKEECAFRSQLETPETLLGSTEEKPLPLGVPDAGMKPS 430 440 450 460 >>XP_011540365 (OMIM: 191191) PREDICTED: tumor necrosis (462 aa) initn: 2610 init1: 2577 opt: 3186 Z-score: 2179.6 bits: 412.6 E(85289): 1.1e-114 Smith-Waterman score: 3186; 99.8% identity (99.8% similar) in 462 aa overlap (1-461:1-462) 10 20 30 40 50 60 pF1KE1 MAPVAVWAALAVGLELWAAAHALPAQVAFTPYAPEPGSTCRLREYYDQTAQMCCSKCSPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MAPVAVWAALAVGLELWAAAHALPAQVAFTPYAPEPGSTCRLREYYDQTAQMCCSKCSPG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 QHAKVFCTKTSDTVCDSCEDSTYTQLWNWVPECLSCGSRCSSDQVETQACTREQNRICTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 QHAKVFCTKTSDTVCDSCEDSTYTQLWNWVPECLSCGSRCSSDQVETQACTREQNRICTC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 RPGWYCALSKQEGCRLCAPLRKCRPGFGVARPGTETSDVVCKPCAPGTFSNTTSSTDICR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 RPGWYCALSKQEGCRLCAPLRKCRPGFGVARPGTETSDVVCKPCAPGTFSNTTSSTDICR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 PHQICNVVAIPGNASMDAVCTSTSPTRSMAPGAVHLPQPVSTRSQHTQPTPEPSTAPSTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 PHQICNVVAIPGNASMDAVCTSTSPTRSMAPGAVHLPQPVSTRSQHTQPTPEPSTAPSTS 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 FLLPMGPSPPAEGSTGDFALPVGLIVGVTALGLLIIGVVNCVIMTQVKKKPLCLQREAKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 FLLPMGPSPPAEGSTGDFALPVGLIVGVTALGLLIIGVVNCVIMTQVKKKPLCLQREAKV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 PHLPADKARGTQGPEQQHLLITAPSSSSSSLESSASALDRRAPTRNQPQAPGVEASGAGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 PHLPADKARGTQGPEQQHLLITAPSSSSSSLESSASALDRRAPTRNQPQAPGVEASGAGE 310 320 330 340 350 360 370 380 390 400 410 pF1KE1 ARASTGSS-DSSPGGHGTQVNVTCIVNVCSSSDHSSQCSSQASSTMGDTDSSPSESPKDE :::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ARASTGSSADSSPGGHGTQVNVTCIVNVCSSSDHSSQCSSQASSTMGDTDSSPSESPKDE 370 380 390 400 410 420 420 430 440 450 460 pF1KE1 QVPFSKEECAFRSQLETPETLLGSTEEKPLPLGVPDAGMKPS :::::::::::::::::::::::::::::::::::::::::: XP_011 QVPFSKEECAFRSQLETPETLLGSTEEKPLPLGVPDAGMKPS 430 440 450 460 >>XP_011540362 (OMIM: 191191) PREDICTED: tumor necrosis (484 aa) initn: 2749 init1: 2570 opt: 2570 Z-score: 1761.1 bits: 335.2 E(85289): 2.3e-91 Smith-Waterman score: 3142; 95.2% identity (95.2% similar) in 484 aa overlap (1-461:1-484) 10 20 30 40 50 60 pF1KE1 MAPVAVWAALAVGLELWAAAHALPAQVAFTPYAPEPGSTCRLREYYDQTAQMCCSKCSPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MAPVAVWAALAVGLELWAAAHALPAQVAFTPYAPEPGSTCRLREYYDQTAQMCCSKCSPG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 QHAKVFCTKTSDTVCDSCEDSTYTQLWNWVPECLSCGSRCSSDQVETQACTREQNRICTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 QHAKVFCTKTSDTVCDSCEDSTYTQLWNWVPECLSCGSRCSSDQVETQACTREQNRICTC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 RPGWYCALSKQEGCRLCAPLRKCRPGFGVARPGTETSDVVCKPCAPGTFSNTTSSTDICR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 RPGWYCALSKQEGCRLCAPLRKCRPGFGVARPGTETSDVVCKPCAPGTFSNTTSSTDICR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 PHQICNVVAIPGNASMDAVCTSTSPTRSMAPGAVHLPQPVSTRSQHTQPTPEPSTAPSTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 PHQICNVVAIPGNASMDAVCTSTSPTRSMAPGAVHLPQPVSTRSQHTQPTPEPSTAPSTS 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 FLLPMGPSPPAEGSTGDFALPVGLIVGVTALGLLIIGVVNCVIMTQVKKKPLCLQREAKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 FLLPMGPSPPAEGSTGDFALPVGLIVGVTALGLLIIGVVNCVIMTQVKKKPLCLQREAKV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 PHLPADKARGTQGPEQQHLLITAPSSSSSSLESSASALDRRAPTRNQPQAPGVEASGAGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 PHLPADKARGTQGPEQQHLLITAPSSSSSSLESSASALDRRAPTRNQPQAPGVEASGAGE 310 320 330 340 350 360 370 380 390 pF1KE1 ARASTGSS-----------------------DSSPGGHGTQVNVTCIVNVCSSSDHSSQC :::::::: ::::::::::::::::::::::::::::: XP_011 ARASTGSSGLSDCMYRHCLLLSPTPGCGTPADSSPGGHGTQVNVTCIVNVCSSSDHSSQC 370 380 390 400 410 420 400 410 420 430 440 450 pF1KE1 SSQASSTMGDTDSSPSESPKDEQVPFSKEECAFRSQLETPETLLGSTEEKPLPLGVPDAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SSQASSTMGDTDSSPSESPKDEQVPFSKEECAFRSQLETPETLLGSTEEKPLPLGVPDAG 430 440 450 460 470 480 460 pF1KE1 MKPS :::: XP_011 MKPS >>XP_016857700 (OMIM: 191191) PREDICTED: tumor necrosis (491 aa) initn: 2133 init1: 2133 opt: 2133 Z-score: 1464.4 bits: 280.3 E(85289): 7.9e-75 Smith-Waterman score: 2133; 100.0% identity (100.0% similar) in 300 aa overlap (1-300:1-300) 10 20 30 40 50 60 pF1KE1 MAPVAVWAALAVGLELWAAAHALPAQVAFTPYAPEPGSTCRLREYYDQTAQMCCSKCSPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MAPVAVWAALAVGLELWAAAHALPAQVAFTPYAPEPGSTCRLREYYDQTAQMCCSKCSPG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 QHAKVFCTKTSDTVCDSCEDSTYTQLWNWVPECLSCGSRCSSDQVETQACTREQNRICTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 QHAKVFCTKTSDTVCDSCEDSTYTQLWNWVPECLSCGSRCSSDQVETQACTREQNRICTC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 RPGWYCALSKQEGCRLCAPLRKCRPGFGVARPGTETSDVVCKPCAPGTFSNTTSSTDICR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 RPGWYCALSKQEGCRLCAPLRKCRPGFGVARPGTETSDVVCKPCAPGTFSNTTSSTDICR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 PHQICNVVAIPGNASMDAVCTSTSPTRSMAPGAVHLPQPVSTRSQHTQPTPEPSTAPSTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PHQICNVVAIPGNASMDAVCTSTSPTRSMAPGAVHLPQPVSTRSQHTQPTPEPSTAPSTS 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 FLLPMGPSPPAEGSTGDFALPVGLIVGVTALGLLIIGVVNCVIMTQVKKKPLCLQREAKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 FLLPMGPSPPAEGSTGDFALPVGLIVGVTALGLLIIGVVNCVIMTQVKKKPLCLQREAKV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 PHLPADKARGTQGPEQQHLLITAPSSSSSSLESSASALDRRAPTRNQPQAPGVEASGAGE XP_016 VSVSTALSPSSPGLLPGVLGCHRGSSEFCHWSVQCQEVCRALGGGGKAGESGSPPWAKRG 310 320 330 340 350 360 >>XP_016857702 (OMIM: 191191) PREDICTED: tumor necrosis (440 aa) initn: 1784 init1: 1784 opt: 1784 Z-score: 1228.2 bits: 236.5 E(85289): 1.1e-61 Smith-Waterman score: 1784; 100.0% identity (100.0% similar) in 249 aa overlap (52-300:1-249) 30 40 50 60 70 80 pF1KE1 ALPAQVAFTPYAPEPGSTCRLREYYDQTAQMCCSKCSPGQHAKVFCTKTSDTVCDSCEDS :::::::::::::::::::::::::::::: XP_016 MCCSKCSPGQHAKVFCTKTSDTVCDSCEDS 10 20 30 90 100 110 120 130 140 pF1KE1 TYTQLWNWVPECLSCGSRCSSDQVETQACTREQNRICTCRPGWYCALSKQEGCRLCAPLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 TYTQLWNWVPECLSCGSRCSSDQVETQACTREQNRICTCRPGWYCALSKQEGCRLCAPLR 40 50 60 70 80 90 150 160 170 180 190 200 pF1KE1 KCRPGFGVARPGTETSDVVCKPCAPGTFSNTTSSTDICRPHQICNVVAIPGNASMDAVCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KCRPGFGVARPGTETSDVVCKPCAPGTFSNTTSSTDICRPHQICNVVAIPGNASMDAVCT 100 110 120 130 140 150 210 220 230 240 250 260 pF1KE1 STSPTRSMAPGAVHLPQPVSTRSQHTQPTPEPSTAPSTSFLLPMGPSPPAEGSTGDFALP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 STSPTRSMAPGAVHLPQPVSTRSQHTQPTPEPSTAPSTSFLLPMGPSPPAEGSTGDFALP 160 170 180 190 200 210 270 280 290 300 310 320 pF1KE1 VGLIVGVTALGLLIIGVVNCVIMTQVKKKPLCLQREAKVPHLPADKARGTQGPEQQHLLI ::::::::::::::::::::::::::::::::::::::: XP_016 VGLIVGVTALGLLIIGVVNCVIMTQVKKKPLCLQREAKVVSVSTALSPSSPGLLPGVLGC 220 230 240 250 260 270 330 340 350 360 370 380 pF1KE1 TAPSSSSSSLESSASALDRRAPTRNQPQAPGVEASGAGEARASTGSSDSSPGGHGTQVNV XP_016 HRGSSEFCHWSVQCQEVCRALGGGGKAGESGSPPWAKRGCECEMLRQRADAFVAFVAGTW 280 290 300 310 320 330 >>XP_016857701 (OMIM: 191191) PREDICTED: tumor necrosis (440 aa) initn: 1784 init1: 1784 opt: 1784 Z-score: 1228.2 bits: 236.5 E(85289): 1.1e-61 Smith-Waterman score: 1784; 100.0% identity (100.0% similar) in 249 aa overlap (52-300:1-249) 30 40 50 60 70 80 pF1KE1 ALPAQVAFTPYAPEPGSTCRLREYYDQTAQMCCSKCSPGQHAKVFCTKTSDTVCDSCEDS :::::::::::::::::::::::::::::: XP_016 MCCSKCSPGQHAKVFCTKTSDTVCDSCEDS 10 20 30 90 100 110 120 130 140 pF1KE1 TYTQLWNWVPECLSCGSRCSSDQVETQACTREQNRICTCRPGWYCALSKQEGCRLCAPLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 TYTQLWNWVPECLSCGSRCSSDQVETQACTREQNRICTCRPGWYCALSKQEGCRLCAPLR 40 50 60 70 80 90 150 160 170 180 190 200 pF1KE1 KCRPGFGVARPGTETSDVVCKPCAPGTFSNTTSSTDICRPHQICNVVAIPGNASMDAVCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KCRPGFGVARPGTETSDVVCKPCAPGTFSNTTSSTDICRPHQICNVVAIPGNASMDAVCT 100 110 120 130 140 150 210 220 230 240 250 260 pF1KE1 STSPTRSMAPGAVHLPQPVSTRSQHTQPTPEPSTAPSTSFLLPMGPSPPAEGSTGDFALP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 STSPTRSMAPGAVHLPQPVSTRSQHTQPTPEPSTAPSTSFLLPMGPSPPAEGSTGDFALP 160 170 180 190 200 210 270 280 290 300 310 320 pF1KE1 VGLIVGVTALGLLIIGVVNCVIMTQVKKKPLCLQREAKVPHLPADKARGTQGPEQQHLLI ::::::::::::::::::::::::::::::::::::::: XP_016 VGLIVGVTALGLLIIGVVNCVIMTQVKKKPLCLQREAKVVSVSTALSPSSPGLLPGVLGC 220 230 240 250 260 270 330 340 350 360 370 380 pF1KE1 TAPSSSSSSLESSASALDRRAPTRNQPQAPGVEASGAGEARASTGSSDSSPGGHGTQVNV XP_016 HRGSSEFCHWSVQCQEVCRALGGGGKAGESGSPPWAKRGCECEMLRQRADAFVAFVAGTW 280 290 300 310 320 330 >>XP_016857704 (OMIM: 191191) PREDICTED: tumor necrosis (266 aa) initn: 1763 init1: 1763 opt: 1763 Z-score: 1217.2 bits: 233.7 E(85289): 4.6e-61 Smith-Waterman score: 1763; 100.0% identity (100.0% similar) in 266 aa overlap (196-461:1-266) 170 180 190 200 210 220 pF1KE1 PGTFSNTTSSTDICRPHQICNVVAIPGNASMDAVCTSTSPTRSMAPGAVHLPQPVSTRSQ :::::::::::::::::::::::::::::: XP_016 MDAVCTSTSPTRSMAPGAVHLPQPVSTRSQ 10 20 30 230 240 250 260 270 280 pF1KE1 HTQPTPEPSTAPSTSFLLPMGPSPPAEGSTGDFALPVGLIVGVTALGLLIIGVVNCVIMT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 HTQPTPEPSTAPSTSFLLPMGPSPPAEGSTGDFALPVGLIVGVTALGLLIIGVVNCVIMT 40 50 60 70 80 90 290 300 310 320 330 340 pF1KE1 QVKKKPLCLQREAKVPHLPADKARGTQGPEQQHLLITAPSSSSSSLESSASALDRRAPTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 QVKKKPLCLQREAKVPHLPADKARGTQGPEQQHLLITAPSSSSSSLESSASALDRRAPTR 100 110 120 130 140 150 350 360 370 380 390 400 pF1KE1 NQPQAPGVEASGAGEARASTGSSDSSPGGHGTQVNVTCIVNVCSSSDHSSQCSSQASSTM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 NQPQAPGVEASGAGEARASTGSSDSSPGGHGTQVNVTCIVNVCSSSDHSSQCSSQASSTM 160 170 180 190 200 210 410 420 430 440 450 460 pF1KE1 GDTDSSPSESPKDEQVPFSKEECAFRSQLETPETLLGSTEEKPLPLGVPDAGMKPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GDTDSSPSESPKDEQVPFSKEECAFRSQLETPETLLGSTEEKPLPLGVPDAGMKPS 220 230 240 250 260 >>XP_016857703 (OMIM: 191191) PREDICTED: tumor necrosis (289 aa) initn: 1197 init1: 1135 opt: 1135 Z-score: 790.3 bits: 154.8 E(85289): 2.8e-37 Smith-Waterman score: 1707; 92.0% identity (92.0% similar) in 289 aa overlap (196-461:1-289) 170 180 190 200 210 220 pF1KE1 PGTFSNTTSSTDICRPHQICNVVAIPGNASMDAVCTSTSPTRSMAPGAVHLPQPVSTRSQ :::::::::::::::::::::::::::::: XP_016 MDAVCTSTSPTRSMAPGAVHLPQPVSTRSQ 10 20 30 230 240 250 260 270 280 pF1KE1 HTQPTPEPSTAPSTSFLLPMGPSPPAEGSTGDFALPVGLIVGVTALGLLIIGVVNCVIMT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 HTQPTPEPSTAPSTSFLLPMGPSPPAEGSTGDFALPVGLIVGVTALGLLIIGVVNCVIMT 40 50 60 70 80 90 290 300 310 320 330 340 pF1KE1 QVKKKPLCLQREAKVPHLPADKARGTQGPEQQHLLITAPSSSSSSLESSASALDRRAPTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 QVKKKPLCLQREAKVPHLPADKARGTQGPEQQHLLITAPSSSSSSLESSASALDRRAPTR 100 110 120 130 140 150 350 360 370 380 pF1KE1 NQPQAPGVEASGAGEARASTGSS-----------------------DSSPGGHGTQVNVT ::::::::::::::::::::::: :::::::::::::: XP_016 NQPQAPGVEASGAGEARASTGSSGLSDCMYRHCLLLSPTPGCGTPADSSPGGHGTQVNVT 160 170 180 190 200 210 390 400 410 420 430 440 pF1KE1 CIVNVCSSSDHSSQCSSQASSTMGDTDSSPSESPKDEQVPFSKEECAFRSQLETPETLLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 CIVNVCSSSDHSSQCSSQASSTMGDTDSSPSESPKDEQVPFSKEECAFRSQLETPETLLG 220 230 240 250 260 270 450 460 pF1KE1 STEEKPLPLGVPDAGMKPS ::::::::::::::::::: XP_016 STEEKPLPLGVPDAGMKPS 280 >>XP_005253745 (OMIM: 600979) PREDICTED: tumor necrosis (399 aa) initn: 341 init1: 199 opt: 487 Z-score: 348.3 bits: 73.5 E(85289): 1.2e-12 Smith-Waterman score: 492; 30.1% identity (53.6% similar) in 366 aa overlap (2-352:9-340) 10 20 30 40 50 pF1KE1 MAPVAVWAALAVGLELWAAAHALPAQVAFTPYAPEPGSTCR--LREYYDQTAQ :: .:. :..:: :: . : : ::: : ..::: .:::. . XP_005 MLLPWATSAPGLAWGPLVLGLFGLLAA-SQPQAVP--PYASE-NQTCRDQEKEYYEPQHR 10 20 30 40 50 60 70 80 90 100 pF1KE1 MCCSKCSPGQHAKVFCTKTSDTVCDSCEDSTYTQLWNWVPECLSCGSRCSSDQV----ET .:::.: :: .... :.. :::: .: ...:.. ::.. : : : : : : XP_005 ICCSRCPPGTYVSAKCSRIRDTVCATCAENSYNEHWNYLTICQLC-RPC--DPVMGLEEI 60 70 80 90 100 110 110 120 130 140 150 160 pF1KE1 QACTREQNRICTCRPGWYCALSKQEGCRLCAPLRKCRPGFGVA-RPGTETSDVVCKPCAP :: ... : :.:: .:: : : : : : :: . . . .. : :: XP_005 APCTSKRKTQCRCQPGMFCAAWALE-CTHCELLSDCPPGTEAELKDEVGKGNNHCVPCKA 120 130 140 150 160 170 170 180 190 200 210 220 pF1KE1 GTFSNTTSSTDICRPHQICN----VVAIPGNASMDAVCTSTSPTRSMAPGAVHLPQPVST : :.::.: . :.:: :. : : ::.:. :..: . : . . : . .. XP_005 GHFQNTSSPSARCQPHTRCENQGLVEAAPGTAQSDTTCKN--PLEPLPPEMS--GSLLKR 180 190 200 210 220 230 240 250 260 270 pF1KE1 RSQHTQPTP-EPSTAPSTSFLLPMGPS--PPAEGSTGDFALPVGLIVGVTALGLLIIGVV : : :.: : : . :. :. : .:: . ::. .:. : .: :: XP_005 RPQGEGPNPVAGSWEPPKAH--PYFPDLVQPLLPISGDVS-PVS--TGLPAAPVLEAGVP 230 240 250 260 270 280 280 290 300 310 320 330 pF1KE1 NCVIMTQVKKKPLCLQREAKVPHL-PADKARGTQGPEQQHLLITAPSSSSSSLESSASAL . ...:: : :: :.: :..... ..: . :. ...:. ... XP_005 Q-------QQSPLDLTRE---PQLEPGEQSQVAHGTNGIHV-------TGGSMTITGNIY 290 300 310 320 340 350 360 370 380 390 pF1KE1 DRRAPTRNQPQAPGVEASGAGEARASTGSSDSSPGGHGTQVNVTCIVNVCSSSDHSSQCS .:. . : .:: XP_005 IYNGPVLGGPPGPGDLPATPEPPYPIPEEGDPGPPGLSTPHQEDGKAWHLAETEHCGATP 330 340 350 360 370 380 >>NP_003814 (OMIM: 603361) tumor necrosis factor recepto (300 aa) initn: 446 init1: 234 opt: 472 Z-score: 339.9 bits: 71.6 E(85289): 3.4e-12 Smith-Waterman score: 472; 34.8% identity (58.1% similar) in 210 aa overlap (13-213:8-208) 10 20 30 40 50 pF1KE1 MAPVAVWAALAVGLELWAAAHALPAQV---AFTPYAPEPGSTCRLREYYDQTAQMCCSKC :: : . :::: . : : : : : .. . :..: NP_003 MRALEGPGLSLLCLVLALPALLPVPAVRGVAETPTYPWRDAETGER---LVCAQC 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 SPGQHAKVFCTKTSDTVCDSCEDSTYTQLWNWVPECLSCGSRCSSDQVETQACTREQNRI :: .. : . : :.: : :::.::.. .: :. :. . :..:: .:: NP_003 PPGTFVQRPCRRDSPTTCGPCPPRHYTQFWNYLERCRYCNVLCGEREEEARACHATHNRA 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 CTCRPGWYCALSKQEGCRLCAPLRKCRPGFGVARPGTETSDVVCKPCAPGTFSNTTSSTD : :: :.. . : .: .: :: :: ::: .... :.:: ::::: ..::.. NP_003 CRCRTGFFA----HAG--FCLEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASSSSSE 120 130 140 150 160 180 190 200 210 220 230 pF1KE1 ICRPHQICNVVA----IPGNASMDAVCTSTS--PTRSMAPGAVHLPQPVSTRSQHTQPTP :.::. :.... .::..: :..::: . : . .::: NP_003 QCQPHRNCTALGLALNVPGSSSHDTLCTSCTGFPLSTRVPGAEECERAVIDFVAFQDISI 170 180 190 200 210 220 240 250 260 270 280 290 pF1KE1 EPSTAPSTSFLLPMGPSPPAEGSTGDFALPVGLIVGVTALGLLIIGVVNCVIMTQVKKKP NP_003 KRLQRLLQALEAPEGWGPTPRAGRAALQLKLRRRLTELLGAQDGALLVRLLQALRVARMP 230 240 250 260 270 280 461 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 19:30:18 2016 done: Sun Nov 6 19:30:20 2016 Total Scan time: 11.660 Total Display time: 0.030 Function used was FASTA [36.3.4 Apr, 2011]