FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1924, 461 aa 1>>>pF1KE1924 461 - 461 aa - 461 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.5091+/-0.000895; mu= 5.4073+/- 0.054 mean_var=209.6572+/-40.817, 0's: 0 Z-trim(115.0): 34 B-trim: 6 in 1/50 Lambda= 0.088577 statistics sampled from 15477 (15511) to 15477 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.787), E-opt: 0.2 (0.476), width: 16 Scan time: 3.800 The best scores are: opt bits E(32554) CCDS145.1 TNFRSF1B gene_id:7133|Hs108|chr1 ( 461) 3198 420.9 1.4e-117 CCDS13532.1 TNFRSF6B gene_id:8771|Hs108|chr20 ( 300) 472 72.4 7.2e-13 CCDS6326.1 TNFRSF11B gene_id:4982|Hs108|chr8 ( 401) 455 70.3 4e-12 CCDS8544.1 LTBR gene_id:4055|Hs108|chr12 ( 435) 451 69.9 6.1e-12 CCDS59233.1 LTBR gene_id:4055|Hs108|chr12 ( 416) 437 68.0 2e-11 CCDS13393.1 CD40 gene_id:958|Hs108|chr20 ( 277) 429 66.9 3.1e-11 >>CCDS145.1 TNFRSF1B gene_id:7133|Hs108|chr1 (461 aa) initn: 3198 init1: 3198 opt: 3198 Z-score: 2224.6 bits: 420.9 E(32554): 1.4e-117 Smith-Waterman score: 3198; 100.0% identity (100.0% similar) in 461 aa overlap (1-461:1-461) 10 20 30 40 50 60 pF1KE1 MAPVAVWAALAVGLELWAAAHALPAQVAFTPYAPEPGSTCRLREYYDQTAQMCCSKCSPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 MAPVAVWAALAVGLELWAAAHALPAQVAFTPYAPEPGSTCRLREYYDQTAQMCCSKCSPG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 QHAKVFCTKTSDTVCDSCEDSTYTQLWNWVPECLSCGSRCSSDQVETQACTREQNRICTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 QHAKVFCTKTSDTVCDSCEDSTYTQLWNWVPECLSCGSRCSSDQVETQACTREQNRICTC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 RPGWYCALSKQEGCRLCAPLRKCRPGFGVARPGTETSDVVCKPCAPGTFSNTTSSTDICR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 RPGWYCALSKQEGCRLCAPLRKCRPGFGVARPGTETSDVVCKPCAPGTFSNTTSSTDICR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 PHQICNVVAIPGNASMDAVCTSTSPTRSMAPGAVHLPQPVSTRSQHTQPTPEPSTAPSTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 PHQICNVVAIPGNASMDAVCTSTSPTRSMAPGAVHLPQPVSTRSQHTQPTPEPSTAPSTS 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 FLLPMGPSPPAEGSTGDFALPVGLIVGVTALGLLIIGVVNCVIMTQVKKKPLCLQREAKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 FLLPMGPSPPAEGSTGDFALPVGLIVGVTALGLLIIGVVNCVIMTQVKKKPLCLQREAKV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 PHLPADKARGTQGPEQQHLLITAPSSSSSSLESSASALDRRAPTRNQPQAPGVEASGAGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 PHLPADKARGTQGPEQQHLLITAPSSSSSSLESSASALDRRAPTRNQPQAPGVEASGAGE 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 ARASTGSSDSSPGGHGTQVNVTCIVNVCSSSDHSSQCSSQASSTMGDTDSSPSESPKDEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 ARASTGSSDSSPGGHGTQVNVTCIVNVCSSSDHSSQCSSQASSTMGDTDSSPSESPKDEQ 370 380 390 400 410 420 430 440 450 460 pF1KE1 VPFSKEECAFRSQLETPETLLGSTEEKPLPLGVPDAGMKPS ::::::::::::::::::::::::::::::::::::::::: CCDS14 VPFSKEECAFRSQLETPETLLGSTEEKPLPLGVPDAGMKPS 430 440 450 460 >>CCDS13532.1 TNFRSF6B gene_id:8771|Hs108|chr20 (300 aa) initn: 446 init1: 234 opt: 472 Z-score: 344.5 bits: 72.4 E(32554): 7.2e-13 Smith-Waterman score: 472; 34.8% identity (58.1% similar) in 210 aa overlap (13-213:8-208) 10 20 30 40 50 pF1KE1 MAPVAVWAALAVGLELWAAAHALPAQV---AFTPYAPEPGSTCRLREYYDQTAQMCCSKC :: : . :::: . : : : : : .. . :..: CCDS13 MRALEGPGLSLLCLVLALPALLPVPAVRGVAETPTYPWRDAETGER---LVCAQC 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 SPGQHAKVFCTKTSDTVCDSCEDSTYTQLWNWVPECLSCGSRCSSDQVETQACTREQNRI :: .. : . : :.: : :::.::.. .: :. :. . :..:: .:: CCDS13 PPGTFVQRPCRRDSPTTCGPCPPRHYTQFWNYLERCRYCNVLCGEREEEARACHATHNRA 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 CTCRPGWYCALSKQEGCRLCAPLRKCRPGFGVARPGTETSDVVCKPCAPGTFSNTTSSTD : :: :.. . : .: .: :: :: ::: .... :.:: ::::: ..::.. CCDS13 CRCRTGFFA----HAG--FCLEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASSSSSE 120 130 140 150 160 180 190 200 210 220 230 pF1KE1 ICRPHQICNVVA----IPGNASMDAVCTSTS--PTRSMAPGAVHLPQPVSTRSQHTQPTP :.::. :.... .::..: :..::: . : . .::: CCDS13 QCQPHRNCTALGLALNVPGSSSHDTLCTSCTGFPLSTRVPGAEECERAVIDFVAFQDISI 170 180 190 200 210 220 240 250 260 270 280 290 pF1KE1 EPSTAPSTSFLLPMGPSPPAEGSTGDFALPVGLIVGVTALGLLIIGVVNCVIMTQVKKKP CCDS13 KRLQRLLQALEAPEGWGPTPRAGRAALQLKLRRRLTELLGAQDGALLVRLLQALRVARMP 230 240 250 260 270 280 >>CCDS6326.1 TNFRSF11B gene_id:4982|Hs108|chr8 (401 aa) initn: 436 init1: 261 opt: 455 Z-score: 331.1 bits: 70.3 E(32554): 4e-12 Smith-Waterman score: 455; 39.3% identity (57.7% similar) in 168 aa overlap (45-206:30-191) 20 30 40 50 60 70 pF1KE1 ELWAAAHALPAQVAFTPYAPEPGSTCRLREYYDQ--TAQMCCSKCSPGQHAKVFCTKTSD .::. . :. :.:: :: . : :: CCDS63 MNNLLCCALVFLDISIKWTTQETFPPKYLHYDEETSHQLLCDKCPPGTYLKQHCTAKWK 10 20 30 40 50 80 90 100 110 120 130 pF1KE1 TVCDSCEDSTYTQLWNWVPECLSCGSRCSSDQVETQACTREQNRICTCRPGWYCALSKQE ::: : : ::. :. ::: :. :. : : :.: .::.: :. : : . CCDS63 TVCAPCPDHYYTDSWHTSDECLYCSPVCKELQYVKQECNRTHNRVCECKEGRYLEI---- 60 70 80 90 100 110 140 150 160 170 180 190 pF1KE1 GCRLCAPLRKCRPGFGVARPGTETSDVVCKPCAPGTFSNTTSSTDICRPHQICNVVAI-- ..: :.: :::::.. :: ..::: : : ::: ::: :: : :.: .. CCDS63 --EFCLKHRSCPPGFGVVQAGTPERNTVCKRCPDGFFSNETSSKAPCRKHTNCSVFGLLL 120 130 140 150 160 170 200 210 220 230 240 pF1KE1 --PGNASMDAVCTSTSPTRSMAPGAVHLPQPVSTRSQHTQPTPEPSTAPSTSFLLPMGPS :::. : .:...: . CCDS63 TQKGNATHDNICSGNSESTQKCGIDVTLCEEAFFRFAVPTKFTPNWLSVLVDNLPGTKVN 180 190 200 210 220 230 >>CCDS8544.1 LTBR gene_id:4055|Hs108|chr12 (435 aa) initn: 341 init1: 199 opt: 451 Z-score: 327.8 bits: 69.9 E(32554): 6.1e-12 Smith-Waterman score: 472; 29.7% identity (52.9% similar) in 391 aa overlap (2-352:9-376) 10 20 30 40 50 pF1KE1 MAPVAVWAALAVGLELWAAAHALPAQVAFTPYAPEPGSTCR--LREYYDQTAQ :: .:. :..:: :: . : : ::: : ..::: .:::. . CCDS85 MLLPWATSAPGLAWGPLVLGLFGLLAA-SQPQAVP--PYASE-NQTCRDQEKEYYEPQHR 10 20 30 40 50 60 70 80 90 100 pF1KE1 MCCSKCSPGQHAKVFCTKTSDTVCDSCEDSTYTQLWNWVPECLSCGSRCSSDQV----ET .:::.: :: .... :.. :::: .: ...:.. ::.. : : : : : : CCDS85 ICCSRCPPGTYVSAKCSRIRDTVCATCAENSYNEHWNYLTICQLC-RPC--DPVMGLEEI 60 70 80 90 100 110 110 120 130 140 150 160 pF1KE1 QACTREQNRICTCRPGWYCALSKQEGCRLCAPLRKCRPGFGVA-RPGTETSDVVCKPCAP :: ... : :.:: .:: : : : : : :: . . . .. : :: CCDS85 APCTSKRKTQCRCQPGMFCAAWALE-CTHCELLSDCPPGTEAELKDEVGKGNNHCVPCKA 120 130 140 150 160 170 170 180 190 200 210 pF1KE1 GTFSNTTSSTDICRPHQICN----VVAIPGNASMDAVCTSTSPTRSMAP---G-----AV : :.::.: . :.:: :. : : ::.:. :..: .: . . : : :: CCDS85 GHFQNTSSPSARCQPHTRCENQGLVEAAPGTAQSDTTCK--NPLEPLPPEMSGTMLMLAV 180 190 200 210 220 230 220 230 240 250 pF1KE1 HLPQP----VSTRSQHTQPTPEPSTAPSTSFLL---PMGPSP-PAEGS---------TGD :: ..: . . .:: . . :: :.: .: :. :: : CCDS85 LLPLAFFLLLATVFSCIWKS-HPSLCRKLGSLLKRRPQGEGPNPVAGSWEPPKAHPYFPD 240 250 260 270 280 260 270 280 290 300 310 pF1KE1 FA---LPVGLIVGVTALGLLIIGVVNCVIMTQVKKKPLCLQREAKVPHL-PADKARGTQG .. ::.. :. .. :: :.. . : ..:: : :: :.: :..... ..: CCDS85 LVQPLLPISGDVSPVSTGLPAAPVLEAGVPQQ--QSPLDLTRE---PQLEPGEQSQVAHG 290 300 310 320 330 340 320 330 340 350 360 370 pF1KE1 PEQQHLLITAPSSSSSSLESSASALDRRAPTRNQPQAPGVEASGAGEARASTGSSDSSPG . :. ...:. ... .:. . : .:: CCDS85 TNGIHV-------TGGSMTITGNIYIYNGPVLGGPPGPGDLPATPEPPYPIPEEGDPGPP 350 360 370 380 390 380 390 400 410 420 430 pF1KE1 GHGTQVNVTCIVNVCSSSDHSSQCSSQASSTMGDTDSSPSESPKDEQVPFSKEECAFRSQ CCDS85 GLSTPHQEDGKAWHLAETEHCGATPSNRGPRNQFITHD 400 410 420 430 >>CCDS59233.1 LTBR gene_id:4055|Hs108|chr12 (416 aa) initn: 341 init1: 199 opt: 437 Z-score: 318.4 bits: 68.0 E(32554): 2e-11 Smith-Waterman score: 458; 29.1% identity (53.3% similar) in 375 aa overlap (18-352:3-357) 10 20 30 40 50 pF1KE1 MAPVAVWAALAVGLELWAAAHALPAQVAFTPYAPEPGSTCR--LREYYDQTAQMCCSKCS :.. .: .:. ::: : ..::: .:::. ..:::.: CCDS59 MEATGISLASQLKVPPYASE-NQTCRDQEKEYYEPQHRICCSRCP 10 20 30 40 60 70 80 90 100 110 pF1KE1 PGQHAKVFCTKTSDTVCDSCEDSTYTQLWNWVPECLSCGSRCSSDQV----ETQACTREQ :: .... :.. :::: .: ...:.. ::.. : : : : : : :: .. CCDS59 PGTYVSAKCSRIRDTVCATCAENSYNEHWNYLTICQLC-RPC--DPVMGLEEIAPCTSKR 50 60 70 80 90 100 120 130 140 150 160 170 pF1KE1 NRICTCRPGWYCALSKQEGCRLCAPLRKCRPGFGVA-RPGTETSDVVCKPCAPGTFSNTT . : :.:: .:: : : : : : :: . . . .. : :: : :.::. CCDS59 KTQCRCQPGMFCAAWALE-CTHCELLSDCPPGTEAELKDEVGKGNNHCVPCKAGHFQNTS 110 120 130 140 150 160 180 190 200 210 pF1KE1 SSTDICRPHQICN----VVAIPGNASMDAVCTSTSPTRSMAP---G-----AVHLPQP-- : . :.:: :. : : ::.:. :..: . : . . : : :: :: CCDS59 SPSARCQPHTRCENQGLVEAAPGTAQSDTTCKN--PLEPLPPEMSGTMLMLAVLLPLAFF 170 180 190 200 210 220 230 240 250 260 pF1KE1 --VSTRSQHTQPTPEPSTAPSTSFLL---PMGPSP-PAEGS---------TGDFA---LP ..: . . .:: . . :: :.: .: :. :: :.. :: CCDS59 LLLATVFSCIWKS-HPSLCRKLGSLLKRRPQGEGPNPVAGSWEPPKAHPYFPDLVQPLLP 220 230 240 250 260 270 270 280 290 300 310 320 pF1KE1 VGLIVGVTALGLLIIGVVNCVIMTQVKKKPLCLQREAKVPHL-PADKARGTQGPEQQHLL .. :. .. :: :.. . : ..:: : :: :.: :..... ..: . :. CCDS59 ISGDVSPVSTGLPAAPVLEAGVPQQ--QSPLDLTRE---PQLEPGEQSQVAHGTNGIHV- 280 290 300 310 320 330 330 340 350 360 370 380 pF1KE1 ITAPSSSSSSLESSASALDRRAPTRNQPQAPGVEASGAGEARASTGSSDSSPGGHGTQVN ...:. ... .:. . : .:: CCDS59 ------TGGSMTITGNIYIYNGPVLGGPPGPGDLPATPEPPYPIPEEGDPGPPGLSTPHQ 340 350 360 370 380 390 400 410 420 430 440 pF1KE1 VTCIVNVCSSSDHSSQCSSQASSTMGDTDSSPSESPKDEQVPFSKEECAFRSQLETPETL CCDS59 EDGKAWHLAETEHCGATPSNRGPRNQFITHD 390 400 410 >>CCDS13393.1 CD40 gene_id:958|Hs108|chr20 (277 aa) initn: 340 init1: 167 opt: 429 Z-score: 315.3 bits: 66.9 E(32554): 3.1e-11 Smith-Waterman score: 429; 35.1% identity (61.2% similar) in 188 aa overlap (29-209:15-195) 10 20 30 40 50 60 pF1KE1 MAPVAVWAALAVGLELWAAAHALPAQVAFTPYAPEPGSTCRLREYYDQTAQMCCSKCSPG .: ::: ..:: ..: ..::: :.:: CCDS13 MVRLPLQCVLWGCLLTAVHPEPPTACREKQYL--INSQCCSLCQPG 10 20 30 40 70 80 90 100 110 pF1KE1 QHAKVFCTKTSDTVCDSCEDSTYTQLWNWVPECLSCGSRCSSD---QVETQACTREQNRI :. ::. ..: : : .: . . :: .: . . :. . .:. : : : . : CCDS13 QKLVSDCTEFTETECLPCGESEFLDTWNRETHCHQ-HKYCDPNLGLRVQ-QKGTSETDTI 50 60 70 80 90 100 120 130 140 150 160 170 pF1KE1 CTCRPGWYCALSKQEGCRLCAPLRKCRPGFGVARPGTETSDVVCKPCAPGTFSNTTSSTD :::. ::.:. .:.:. :. :.: ::::: . .: .::..:.:: : :::..:. . CCDS13 CTCEEGWHCT---SEACESCVLHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFE 110 120 130 140 150 180 190 200 210 220 230 pF1KE1 ICRPHQICN----VVAIPGNASMDAVCTSTSPTRSMAPGAVHLPQPVSTRSQHTQPTPEP :.: :. :: :. . :.:: . :.. CCDS13 KCHPWTSCETKDLVVQQAGTNKTDVVCGPQDRLRALVVIPIIFGILFAILLVLVFIKKVA 160 170 180 190 200 210 240 250 260 270 280 290 pF1KE1 STAPSTSFLLPMGPSPPAEGSTGDFALPVGLIVGVTALGLLIIGVVNCVIMTQVKKKPLC CCDS13 KKPTNKAPHPKQEPQEINFPDDLPGSNTAAPVQETLHGCQPVTQEDGKESRISVQERQ 220 230 240 250 260 270 461 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 19:30:17 2016 done: Sun Nov 6 19:30:18 2016 Total Scan time: 3.800 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]