Result of FASTA (omim) for
pFN21AE2608
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2608, 349 aa
1>>>pF1KE2608 349 - 349 aa - 349 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.4955+/-0.0003; mu= 12.7251+/- 0.019
mean_var=131.3044+/-25.736, 0's: 0 Z-trim(121.2): 4 B-trim: 39 in 1/52
Lambda= 0.111927
statistics sampled from 37386 (37392) to 37386 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.783), E-opt: 0.2 (0.438), width: 16
Scan time: 6.370
The best scores are: opt bits E(85289)
NP_940947 (OMIM: 612682) draxin precursor [Homo sa ( 349) 2434 403.8 3e-112
XP_016856703 (OMIM: 612682) PREDICTED: draxin isof ( 378) 2434 403.8 3.2e-112
XP_011539707 (OMIM: 612682) PREDICTED: draxin isof ( 427) 2434 403.8 3.5e-112
XP_016856704 (OMIM: 612682) PREDICTED: draxin isof ( 242) 1046 179.5 6.7e-45
>>NP_940947 (OMIM: 612682) draxin precursor [Homo sapien (349 aa)
initn: 2434 init1: 2434 opt: 2434 Z-score: 2136.3 bits: 403.8 E(85289): 3e-112
Smith-Waterman score: 2434; 100.0% identity (100.0% similar) in 349 aa overlap (1-349:1-349)
10 20 30 40 50 60
pF1KE2 MAGPAIHTAPMLFLVLLLPLELSLAGALAPGTPARNLPENHIDLPGPALWTPQASHHRRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_940 MAGPAIHTAPMLFLVLLLPLELSLAGALAPGTPARNLPENHIDLPGPALWTPQASHHRRR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 GPGKKEWGPGLPSQAQDGAVVTATRQASRLPEAEGLLPEQSPAGLLQDKDLLLGLALPYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_940 GPGKKEWGPGLPSQAQDGAVVTATRQASRLPEAEGLLPEQSPAGLLQDKDLLLGLALPYP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 EKENRPPGWERTRKRSREHKRRRDRLRLHQGRALVRGPSSLMKKAELSEAQVLDAAMEES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_940 EKENRPPGWERTRKRSREHKRRRDRLRLHQGRALVRGPSSLMKKAELSEAQVLDAAMEES
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 STSLAPTMFFLTTFEAAPATEESLILPVTSLRPQQAQPRSDGEVMPTLDMALFDWTDYED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_940 STSLAPTMFFLTTFEAAPATEESLILPVTSLRPQQAQPRSDGEVMPTLDMALFDWTDYED
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 LKPDGWPSAKKKEKHRGKLSSDGNETSPAEGEPCDHHQDCLPGTCCDLREHLCTPHNRGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_940 LKPDGWPSAKKKEKHRGKLSSDGNETSPAEGEPCDHHQDCLPGTCCDLREHLCTPHNRGL
250 260 270 280 290 300
310 320 330 340
pF1KE2 NNKCFDDCMCVEGLRCYAKFHRNRRVTRRKGRCVEPETANGDQGSFINV
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_940 NNKCFDDCMCVEGLRCYAKFHRNRRVTRRKGRCVEPETANGDQGSFINV
310 320 330 340
>>XP_016856703 (OMIM: 612682) PREDICTED: draxin isoform (378 aa)
initn: 2434 init1: 2434 opt: 2434 Z-score: 2135.8 bits: 403.8 E(85289): 3.2e-112
Smith-Waterman score: 2434; 100.0% identity (100.0% similar) in 349 aa overlap (1-349:30-378)
10 20 30
pF1KE2 MAGPAIHTAPMLFLVLLLPLELSLAGALAPG
:::::::::::::::::::::::::::::::
XP_016 MNTGPQLYPWRRKSCWLHTAPSPRPREEPMAGPAIHTAPMLFLVLLLPLELSLAGALAPG
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE2 TPARNLPENHIDLPGPALWTPQASHHRRRGPGKKEWGPGLPSQAQDGAVVTATRQASRLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TPARNLPENHIDLPGPALWTPQASHHRRRGPGKKEWGPGLPSQAQDGAVVTATRQASRLP
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE2 EAEGLLPEQSPAGLLQDKDLLLGLALPYPEKENRPPGWERTRKRSREHKRRRDRLRLHQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EAEGLLPEQSPAGLLQDKDLLLGLALPYPEKENRPPGWERTRKRSREHKRRRDRLRLHQG
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE2 RALVRGPSSLMKKAELSEAQVLDAAMEESSTSLAPTMFFLTTFEAAPATEESLILPVTSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RALVRGPSSLMKKAELSEAQVLDAAMEESSTSLAPTMFFLTTFEAAPATEESLILPVTSL
190 200 210 220 230 240
220 230 240 250 260 270
pF1KE2 RPQQAQPRSDGEVMPTLDMALFDWTDYEDLKPDGWPSAKKKEKHRGKLSSDGNETSPAEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RPQQAQPRSDGEVMPTLDMALFDWTDYEDLKPDGWPSAKKKEKHRGKLSSDGNETSPAEG
250 260 270 280 290 300
280 290 300 310 320 330
pF1KE2 EPCDHHQDCLPGTCCDLREHLCTPHNRGLNNKCFDDCMCVEGLRCYAKFHRNRRVTRRKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EPCDHHQDCLPGTCCDLREHLCTPHNRGLNNKCFDDCMCVEGLRCYAKFHRNRRVTRRKG
310 320 330 340 350 360
340
pF1KE2 RCVEPETANGDQGSFINV
::::::::::::::::::
XP_016 RCVEPETANGDQGSFINV
370
>>XP_011539707 (OMIM: 612682) PREDICTED: draxin isoform (427 aa)
initn: 2434 init1: 2434 opt: 2434 Z-score: 2135.1 bits: 403.8 E(85289): 3.5e-112
Smith-Waterman score: 2434; 100.0% identity (100.0% similar) in 349 aa overlap (1-349:79-427)
10 20 30
pF1KE2 MAGPAIHTAPMLFLVLLLPLELSLAGALAP
::::::::::::::::::::::::::::::
XP_011 LMNTGPQLYPWRRKSCWLHTAPSPRPREEPMAGPAIHTAPMLFLVLLLPLELSLAGALAP
50 60 70 80 90 100
40 50 60 70 80 90
pF1KE2 GTPARNLPENHIDLPGPALWTPQASHHRRRGPGKKEWGPGLPSQAQDGAVVTATRQASRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GTPARNLPENHIDLPGPALWTPQASHHRRRGPGKKEWGPGLPSQAQDGAVVTATRQASRL
110 120 130 140 150 160
100 110 120 130 140 150
pF1KE2 PEAEGLLPEQSPAGLLQDKDLLLGLALPYPEKENRPPGWERTRKRSREHKRRRDRLRLHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PEAEGLLPEQSPAGLLQDKDLLLGLALPYPEKENRPPGWERTRKRSREHKRRRDRLRLHQ
170 180 190 200 210 220
160 170 180 190 200 210
pF1KE2 GRALVRGPSSLMKKAELSEAQVLDAAMEESSTSLAPTMFFLTTFEAAPATEESLILPVTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GRALVRGPSSLMKKAELSEAQVLDAAMEESSTSLAPTMFFLTTFEAAPATEESLILPVTS
230 240 250 260 270 280
220 230 240 250 260 270
pF1KE2 LRPQQAQPRSDGEVMPTLDMALFDWTDYEDLKPDGWPSAKKKEKHRGKLSSDGNETSPAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LRPQQAQPRSDGEVMPTLDMALFDWTDYEDLKPDGWPSAKKKEKHRGKLSSDGNETSPAE
290 300 310 320 330 340
280 290 300 310 320 330
pF1KE2 GEPCDHHQDCLPGTCCDLREHLCTPHNRGLNNKCFDDCMCVEGLRCYAKFHRNRRVTRRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GEPCDHHQDCLPGTCCDLREHLCTPHNRGLNNKCFDDCMCVEGLRCYAKFHRNRRVTRRK
350 360 370 380 390 400
340
pF1KE2 GRCVEPETANGDQGSFINV
:::::::::::::::::::
XP_011 GRCVEPETANGDQGSFINV
410 420
>>XP_016856704 (OMIM: 612682) PREDICTED: draxin isoform (242 aa)
initn: 1037 init1: 1037 opt: 1046 Z-score: 927.0 bits: 179.5 E(85289): 6.7e-45
Smith-Waterman score: 1046; 95.0% identity (96.3% similar) in 161 aa overlap (1-161:79-239)
10 20 30
pF1KE2 MAGPAIHTAPMLFLVLLLPLELSLAGALAP
::::::::::::::::::::::::::::::
XP_016 LMNTGPQLYPWRRKSCWLHTAPSPRPREEPMAGPAIHTAPMLFLVLLLPLELSLAGALAP
50 60 70 80 90 100
40 50 60 70 80 90
pF1KE2 GTPARNLPENHIDLPGPALWTPQASHHRRRGPGKKEWGPGLPSQAQDGAVVTATRQASRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GTPARNLPENHIDLPGPALWTPQASHHRRRGPGKKEWGPGLPSQAQDGAVVTATRQASRL
110 120 130 140 150 160
100 110 120 130 140 150
pF1KE2 PEAEGLLPEQSPAGLLQDKDLLLGLALPYPEKENRPPGWERTRKRSREHKRRRDRLRLHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PEAEGLLPEQSPAGLLQDKDLLLGLALPYPEKENRPPGWERTRKRSREHKRRRDRLRLHQ
170 180 190 200 210 220
160 170 180 190 200 210
pF1KE2 GRALVRGPSSLMKKAELSEAQVLDAAMEESSTSLAPTMFFLTTFEAAPATEESLILPVTS
. : :.:
XP_016 DHPPESGSSTLYLT
230 240
349 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 17:03:06 2016 done: Tue Nov 8 17:03:07 2016
Total Scan time: 6.370 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]