FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1815, 331 aa 1>>>pF1KE1815 331 - 331 aa - 331 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.3962+/-0.000375; mu= 5.9216+/- 0.023 mean_var=123.7622+/-25.060, 0's: 0 Z-trim(116.3): 21 B-trim: 288 in 2/54 Lambda= 0.115287 statistics sampled from 27333 (27352) to 27333 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.692), E-opt: 0.2 (0.321), width: 16 Scan time: 7.930 The best scores are: opt bits E(85289) NP_004392 (OMIM: 601882) DNA fragmentation factor ( 331) 2118 363.4 3.9e-100 NP_998731 (OMIM: 601882) DNA fragmentation factor ( 268) 1669 288.6 9.7e-78 NP_001270 (OMIM: 604440) cell death activator CIDE ( 219) 180 40.9 0.0029 NP_001305312 (OMIM: 604440) cell death activator C ( 253) 180 41.0 0.0033 >>NP_004392 (OMIM: 601882) DNA fragmentation factor subu (331 aa) initn: 2118 init1: 2118 opt: 2118 Z-score: 1918.8 bits: 363.4 E(85289): 3.9e-100 Smith-Waterman score: 2118; 100.0% identity (100.0% similar) in 331 aa overlap (1-331:1-331) 10 20 30 40 50 60 pF1KE1 MEVTGDAGVPESGEIRTLKPCLLRRNYSREQHGVAASCLEDLRSKACDILAIDKSLTPVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MEVTGDAGVPESGEIRTLKPCLLRRNYSREQHGVAASCLEDLRSKACDILAIDKSLTPVT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 LVLAEDGTIVDDDDYFLCLPSNTKFVALASNEKWAYNNSDGGTAWISQESFDVDETDSGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 LVLAEDGTIVDDDDYFLCLPSNTKFVALASNEKWAYNNSDGGTAWISQESFDVDETDSGA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 GLKWKNVARQLKEDLSSIILLSEEDLQMLVDAPCSDLAQELRQSCATVQRLQHTLQQVLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 GLKWKNVARQLKEDLSSIILLSEEDLQMLVDAPCSDLAQELRQSCATVQRLQHTLQQVLD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 QREEVRQSKQLLQLYLQALEKEGSLLSKQEESKAAFGEEVDAVDTGISRETSSDVALASH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 QREEVRQSKQLLQLYLQALEKEGSLLSKQEESKAAFGEEVDAVDTGISRETSSDVALASH 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 ILTALREKQAPELSLSSQDLELVTKEDPKALAVALNWDIKKTETVQEACERELALRLQQT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 ILTALREKQAPELSLSSQDLELVTKEDPKALAVALNWDIKKTETVQEACERELALRLQQT 250 260 270 280 290 300 310 320 330 pF1KE1 QSLHSLRSISASKASPPGDLQNPKRARQDPT ::::::::::::::::::::::::::::::: NP_004 QSLHSLRSISASKASPPGDLQNPKRARQDPT 310 320 330 >>NP_998731 (OMIM: 601882) DNA fragmentation factor subu (268 aa) initn: 1669 init1: 1669 opt: 1669 Z-score: 1516.6 bits: 288.6 E(85289): 9.7e-78 Smith-Waterman score: 1669; 99.6% identity (100.0% similar) in 262 aa overlap (1-262:1-262) 10 20 30 40 50 60 pF1KE1 MEVTGDAGVPESGEIRTLKPCLLRRNYSREQHGVAASCLEDLRSKACDILAIDKSLTPVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_998 MEVTGDAGVPESGEIRTLKPCLLRRNYSREQHGVAASCLEDLRSKACDILAIDKSLTPVT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 LVLAEDGTIVDDDDYFLCLPSNTKFVALASNEKWAYNNSDGGTAWISQESFDVDETDSGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_998 LVLAEDGTIVDDDDYFLCLPSNTKFVALASNEKWAYNNSDGGTAWISQESFDVDETDSGA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 GLKWKNVARQLKEDLSSIILLSEEDLQMLVDAPCSDLAQELRQSCATVQRLQHTLQQVLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_998 GLKWKNVARQLKEDLSSIILLSEEDLQMLVDAPCSDLAQELRQSCATVQRLQHTLQQVLD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 QREEVRQSKQLLQLYLQALEKEGSLLSKQEESKAAFGEEVDAVDTGISRETSSDVALASH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_998 QREEVRQSKQLLQLYLQALEKEGSLLSKQEESKAAFGEEVDAVDTGISRETSSDVALASH 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 ILTALREKQAPELSLSSQDLELVTKEDPKALAVALNWDIKKTETVQEACERELALRLQQT :::::::::::::::::::::. NP_998 ILTALREKQAPELSLSSQDLEVGGNQGH 250 260 >>NP_001270 (OMIM: 604440) cell death activator CIDE-A i (219 aa) initn: 151 init1: 130 opt: 180 Z-score: 179.5 bits: 40.9 E(85289): 0.0029 Smith-Waterman score: 180; 30.1% identity (55.4% similar) in 166 aa overlap (26-184:41-204) 10 20 30 40 50 pF1KE1 MEVTGDAGVPESGEIRTLKPCLLRRNYSRE-QHGVAASCLEDLRSKACDILAIDK :..: ..:: :: :..: ::. : :.: NP_001 LIRPLTFMGSQTKRVLFTPLMHPARPFRVSNHDRSSRRGVMASSLQELISKTLDALVIAT 20 30 40 50 60 70 60 70 80 90 100 pF1KE1 SLTPVTLVLAEDGTIVDDDDYFLCLPSNTKFVALASNEKWAYNN------SDGGTAWISQ .: ::::: ::::.:: ...: : .::.:. : ...:: .. : . :.. NP_001 GL--VTLVLEEDGTVVDTEEFFQTLGDNTHFMILEKGQKWMPGSQHVPTCSPPKRSGIAR 80 90 100 110 120 110 120 130 140 150 160 pF1KE1 ESFDVDETDSGAGLKWKNVARQLKEDLSSIILLSEEDLQMLVDAPCSDLAQELRQSCATV .::. . . . :: . : : . :. :. . :. . . . NP_001 VTFDLYRLNPKDFIGCLNVKATMYEMYSVSYDIRCTGLKGLLRSLLRFLSYSAQVTGQFL 130 140 150 160 170 180 170 180 190 200 210 220 pF1KE1 QRLQHTLQQVLDQREEVRQSKQLLQLYLQALEKEGSLLSKQEESKAAFGEEVDAVDTGIS : . .:::..:: NP_001 IYLGTYMLRVLDDKEERPSLRSQAKGRFTCG 190 200 210 >>NP_001305312 (OMIM: 604440) cell death activator CIDE- (253 aa) initn: 151 init1: 130 opt: 180 Z-score: 178.6 bits: 41.0 E(85289): 0.0033 Smith-Waterman score: 180; 30.1% identity (55.4% similar) in 166 aa overlap (26-184:75-238) 10 20 30 40 50 pF1KE1 MEVTGDAGVPESGEIRTLKPCLLRRNYSRE-QHGVAASCLEDLRSKACDILAIDK :..: ..:: :: :..: ::. : :.: NP_001 PSRPLTFMGSQTKRVLFTPLMHPARPFRVSNHDRSSRRGVMASSLQELISKTLDALVIAT 50 60 70 80 90 100 60 70 80 90 100 pF1KE1 SLTPVTLVLAEDGTIVDDDDYFLCLPSNTKFVALASNEKWAYNN------SDGGTAWISQ .: ::::: ::::.:: ...: : .::.:. : ...:: .. : . :.. NP_001 GL--VTLVLEEDGTVVDTEEFFQTLGDNTHFMILEKGQKWMPGSQHVPTCSPPKRSGIAR 110 120 130 140 150 160 110 120 130 140 150 160 pF1KE1 ESFDVDETDSGAGLKWKNVARQLKEDLSSIILLSEEDLQMLVDAPCSDLAQELRQSCATV .::. . . . :: . : : . :. :. . :. . . . NP_001 VTFDLYRLNPKDFIGCLNVKATMYEMYSVSYDIRCTGLKGLLRSLLRFLSYSAQVTGQFL 170 180 190 200 210 220 170 180 190 200 210 220 pF1KE1 QRLQHTLQQVLDQREEVRQSKQLLQLYLQALEKEGSLLSKQEESKAAFGEEVDAVDTGIS : . .:::..:: NP_001 IYLGTYMLRVLDDKEERPSLRSQAKGRFTCG 230 240 250 331 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 19:31:19 2016 done: Sun Nov 6 19:31:20 2016 Total Scan time: 7.930 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]