FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3705, 138 aa
  1>>>pF1KE3705 138 - 138 aa - 138 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6306+/-0.000325; mu= 10.5161+/- 0.020
 mean_var=79.9526+/-15.677, 0's: 0 Z-trim(115.9): 43  B-trim: 229 in 1/49
 Lambda= 0.143436
 statistics sampled from 26605 (26646) to 26605 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.684), E-opt: 0.2 (0.312), width:  16
 Scan time:  4.440

The best scores are:                                      opt bits E(85289)
NP_954988 (OMIM: 609130) centromere protein S [Hom ( 138)  867 188.2 3.5e-48


>>NP_954988 (OMIM: 609130) centromere protein S [Homo sa  (138 aa)
 initn: 867 init1: 867 opt: 867  Z-score: 985.9  bits: 188.2 E(85289): 3.5e-48
Smith-Waterman score: 867; 100.0% identity (100.0% similar) in 138 aa overlap (1-138:1-138)

               10        20        30        40        50        60
pF1KE3 MEEEAETEEQQRFSYQQRLKAAVHYTVGCLCEEVALDKEMQFSKQTIAAISELTFRQCEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 MEEEAETEEQQRFSYQQRLKAAVHYTVGCLCEEVALDKEMQFSKQTIAAISELTFRQCEN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 FAKDLEMFARHAKRTTINTEDVKLLARRSNSLLKYITDKSEEIAQINLERKAQKKKKSED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 FAKDLEMFARHAKRTTINTEDVKLLARRSNSLLKYITDKSEEIAQINLERKAQKKKKSED
               70        80        90       100       110       120

              130        
pF1KE3 GSKNSRQPAEAGVVESEN
       ::::::::::::::::::
NP_954 GSKNSRQPAEAGVVESEN
              130        




138 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 18:53:10 2016 done: Mon Nov  7 18:53:10 2016
 Total Scan time:  4.440 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]