FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1776, 284 aa 1>>>pF1KE1776 284 - 284 aa - 284 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.8778+/-0.000393; mu= 17.0593+/- 0.024 mean_var=62.4156+/-13.206, 0's: 0 Z-trim(112.3): 29 B-trim: 511 in 1/53 Lambda= 0.162341 statistics sampled from 21142 (21153) to 21142 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.62), E-opt: 0.2 (0.248), width: 16 Scan time: 7.240 The best scores are: opt bits E(85289) NP_036537 (OMIM: 605851) protein-S-isoprenylcystei ( 284) 1919 458.1 8.4e-129 XP_011539442 (OMIM: 605851) PREDICTED: protein-S-i ( 188) 1277 307.7 1.1e-83 >>NP_036537 (OMIM: 605851) protein-S-isoprenylcysteine O (284 aa) initn: 1919 init1: 1919 opt: 1919 Z-score: 2433.4 bits: 458.1 E(85289): 8.4e-129 Smith-Waterman score: 1919; 100.0% identity (100.0% similar) in 284 aa overlap (1-284:1-284) 10 20 30 40 50 60 pF1KE1 MAGCAARAPPGSEARLSLATFLLGASVLALPLLTRAGLQGRTGLALYVAGLNALLLLLYR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 MAGCAARAPPGSEARLSLATFLLGASVLALPLLTRAGLQGRTGLALYVAGLNALLLLLYR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 PPRYQIAIRACFLGFVFGCGTLLSFSQSSWSHFGWYMCSLSLFHYSEYLVTAVNNPKSLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 PPRYQIAIRACFLGFVFGCGTLLSFSQSSWSHFGWYMCSLSLFHYSEYLVTAVNNPKSLS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 LDSFLLNHSLEYTVAALSSWLEFTLENIFWPELKQITWLSVTGLLMVVFGECLRKAAMFT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 LDSFLLNHSLEYTVAALSSWLEFTLENIFWPELKQITWLSVTGLLMVVFGECLRKAAMFT 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 AGSNFNHVVQNEKSDTHTLVTSGVYAWFRHPSYVGWFYWSIGTQVMLCNPICGVSYALTV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 AGSNFNHVVQNEKSDTHTLVTSGVYAWFRHPSYVGWFYWSIGTQVMLCNPICGVSYALTV 190 200 210 220 230 240 250 260 270 280 pF1KE1 WRFFRDRTEEEEISLIHFFGEEYLEYKKRVPTGLPFIKGVKVDL :::::::::::::::::::::::::::::::::::::::::::: NP_036 WRFFRDRTEEEEISLIHFFGEEYLEYKKRVPTGLPFIKGVKVDL 250 260 270 280 >>XP_011539442 (OMIM: 605851) PREDICTED: protein-S-isopr (188 aa) initn: 1277 init1: 1277 opt: 1277 Z-score: 1623.3 bits: 307.7 E(85289): 1.1e-83 Smith-Waterman score: 1277; 100.0% identity (100.0% similar) in 188 aa overlap (97-284:1-188) 70 80 90 100 110 120 pF1KE1 AIRACFLGFVFGCGTLLSFSQSSWSHFGWYMCSLSLFHYSEYLVTAVNNPKSLSLDSFLL :::::::::::::::::::::::::::::: XP_011 MCSLSLFHYSEYLVTAVNNPKSLSLDSFLL 10 20 30 130 140 150 160 170 180 pF1KE1 NHSLEYTVAALSSWLEFTLENIFWPELKQITWLSVTGLLMVVFGECLRKAAMFTAGSNFN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 NHSLEYTVAALSSWLEFTLENIFWPELKQITWLSVTGLLMVVFGECLRKAAMFTAGSNFN 40 50 60 70 80 90 190 200 210 220 230 240 pF1KE1 HVVQNEKSDTHTLVTSGVYAWFRHPSYVGWFYWSIGTQVMLCNPICGVSYALTVWRFFRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 HVVQNEKSDTHTLVTSGVYAWFRHPSYVGWFYWSIGTQVMLCNPICGVSYALTVWRFFRD 100 110 120 130 140 150 250 260 270 280 pF1KE1 RTEEEEISLIHFFGEEYLEYKKRVPTGLPFIKGVKVDL :::::::::::::::::::::::::::::::::::::: XP_011 RTEEEEISLIHFFGEEYLEYKKRVPTGLPFIKGVKVDL 160 170 180 284 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 19:33:35 2016 done: Sun Nov 6 19:33:36 2016 Total Scan time: 7.240 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]