FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4173, 634 aa 1>>>pF1KE4173 634 - 634 aa - 634 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.2933+/-0.000908; mu= 11.6743+/- 0.055 mean_var=149.2479+/-31.511, 0's: 0 Z-trim(110.9): 66 B-trim: 1196 in 2/53 Lambda= 0.104983 statistics sampled from 11892 (11958) to 11892 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.716), E-opt: 0.2 (0.367), width: 16 Scan time: 3.700 The best scores are: opt bits E(32554) CCDS59.2 RNF207 gene_id:388591|Hs108|chr1 ( 634) 4290 661.8 8.1e-190 >>CCDS59.2 RNF207 gene_id:388591|Hs108|chr1 (634 aa) initn: 4290 init1: 4290 opt: 4290 Z-score: 3521.3 bits: 661.8 E(32554): 8.1e-190 Smith-Waterman score: 4290; 100.0% identity (100.0% similar) in 634 aa overlap (1-634:1-634) 10 20 30 40 50 60 pF1KE4 MSGAIFGPLEGPSSLDAPSIHPLVCPLCHVQYERPCLLDCFHDFCAGCLRGRATDGRLTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 MSGAIFGPLEGPSSLDAPSIHPLVCPLCHVQYERPCLLDCFHDFCAGCLRGRATDGRLTC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 PLCQHQTVLKGPSGLPPVDRLLQFLVDSSGDGVEAVRCANCDLECSEQDVETTYFCNTCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 PLCQHQTVLKGPSGLPPVDRLLQFLVDSSGDGVEAVRCANCDLECSEQDVETTYFCNTCG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 QPLCARCRDETHRARMFARHDIVALGQRSRDVPQKCTLHAEPYLLFSTDKKLLLCIRCFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 QPLCARCRDETHRARMFARHDIVALGQRSRDVPQKCTLHAEPYLLFSTDKKLLLCIRCFR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 DMQKESRAHCVDLESAYVQGCERLEQAVLAVKALQTATREAIALLQAMVEEVRHSAAEEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 DMQKESRAHCVDLESAYVQGCERLEQAVLAVKALQTATREAIALLQAMVEEVRHSAAEEE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 DAIHALFGSMQDRLAERKALLLQAVQSQYEEKDKAFKEQLSHLATLLPTLQVHLVICSSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 DAIHALFGSMQDRLAERKALLLQAVQSQYEEKDKAFKEQLSHLATLLPTLQVHLVICSSF 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 LSLANKAEFLDLGYELMERLQGIVTRPHHLRPIQSSKIASDHRAEFARCLEPLLLLGPRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 LSLANKAEFLDLGYELMERLQGIVTRPHHLRPIQSSKIASDHRAEFARCLEPLLLLGPRR 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE4 VAAAASGANTLAGGLGPKALTGPHCPSPVGKMSGSPVQKPTLHRSISTKVLLAEGENTPF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 VAAAASGANTLAGGLGPKALTGPHCPSPVGKMSGSPVQKPTLHRSISTKVLLAEGENTPF 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE4 AEHCRHYEDSYRHLQAEMQSLKDQVQELHRDLTKHHSLIKAEIMGDVLHKSLQLDVQIAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 AEHCRHYEDSYRHLQAEMQSLKDQVQELHRDLTKHHSLIKAEIMGDVLHKSLQLDVQIAS 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE4 EHASLEGMRVVFQEIWEEAYQRVANEQEIYEAQLHDLLQLRQENAYLTTITKQITPYVRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 EHASLEGMRVVFQEIWEEAYQRVANEQEIYEAQLHDLLQLRQENAYLTTITKQITPYVRS 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE4 IAKVKERLEPRFQAPVDEQSESLQNTHDDSRNNAASARNNPGSVPEKREKTSEPKGNSWA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 IAKVKERLEPRFQAPVDEQSESLQNTHDDSRNNAASARNNPGSVPEKREKTSEPKGNSWA 550 560 570 580 590 600 610 620 630 pF1KE4 PNGLSEEPLLKNMDHHRSKQKNGGDVPTWREHPT :::::::::::::::::::::::::::::::::: CCDS59 PNGLSEEPLLKNMDHHRSKQKNGGDVPTWREHPT 610 620 630 634 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 03:34:35 2016 done: Sun Nov 6 03:34:36 2016 Total Scan time: 3.700 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]