FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5315, 303 aa 1>>>pF1KE5315 303 - 303 aa - 303 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6394+/-0.000668; mu= 14.1225+/- 0.041 mean_var=68.5533+/-13.815, 0's: 0 Z-trim(110.1): 7 B-trim: 78 in 1/53 Lambda= 0.154903 statistics sampled from 11339 (11345) to 11339 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.348), width: 16 Scan time: 2.740 The best scores are: opt bits E(32554) CCDS20.1 PUSL1 gene_id:126789|Hs108|chr1 ( 303) 2006 456.8 9.4e-129 >>CCDS20.1 PUSL1 gene_id:126789|Hs108|chr1 (303 aa) initn: 2006 init1: 2006 opt: 2006 Z-score: 2425.0 bits: 456.8 E(32554): 9.4e-129 Smith-Waterman score: 2006; 99.7% identity (100.0% similar) in 303 aa overlap (1-303:1-303) 10 20 30 40 50 60 pF1KE5 MSSAPASGSVRARYLVYFQYVGTDFNGVAAVRGTQRAVGVQNYLEEAAERLNSVEPVRFT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS20 MSSAPASGSVRARYLVYFQYVGTDFNGVAAVRGTQRAVGVQNYLEEAAERLNSVEPVRFT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 ISSRTDAGVHALSNAAHLDVQRRSGRPPFPPEVLAEALNTHLRHPAIRVLRAFRVPSDFH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS20 ISSRTDAGVHALSNAAHLDVQRRSGRPPFPPEVLAEALNTHLRHPAIRVLRAFRVPSDFH 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 ARHAATSRTYLYRLATGCHRRDELPVFERNLCWTLPADCLDMVAMQEAAQHLLGTHDFSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS20 ARHAATSRTYLYRLATGCHRRDELPVFERNLCWTLPADCLDMVAMQEAAQHLLGTHDFSA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 FQSAGSPVPSPVRTLRRVSVSPGQASPLVTPEESRKLRFWNLEFESQSFLYRQVRRMTAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS20 FQSAGSPVPSPVRTLRRVSVSPGQASPLVTPEESRKLRFWNLEFESQSFLYRQVRRMTAV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 LVAVGLGALAPAQVKTILESQDPLGKHQTRVAPAHGLFLKSVLYGNLGAASCTLQGPQFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS20 LVAVGLGALAPAQVKTILESQDPLGKHQTRVAPAHGLFLKSVLYGNLGAASCTLQGPQFG 250 260 270 280 290 300 pF1KE5 NHG .:: CCDS20 SHG 303 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 23:44:13 2016 done: Mon Nov 7 23:44:13 2016 Total Scan time: 2.740 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]