FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1768, 277 aa
  1>>>pF1KE1768 277 - 277 aa - 277 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2813+/-0.000782; mu= 9.2851+/- 0.047
 mean_var=187.7580+/-36.947, 0's: 0 Z-trim(117.0): 38  B-trim: 434 in 1/50
 Lambda= 0.093600
 statistics sampled from 17621 (17659) to 17621 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.837), E-opt: 0.2 (0.542), width:  16
 Scan time:  2.920

The best scores are:                                      opt bits E(32554)
CCDS11.1 TNFRSF4 gene_id:7293|Hs108|chr1           ( 277) 2015 283.3 1.3e-76


>>CCDS11.1 TNFRSF4 gene_id:7293|Hs108|chr1                (277 aa)
 initn: 2015 init1: 2015 opt: 2015  Z-score: 1488.6  bits: 283.3 E(32554): 1.3e-76
Smith-Waterman score: 2015; 100.0% identity (100.0% similar) in 277 aa overlap (1-277:1-277)

               10        20        30        40        50        60
pF1KE1 MCVGARRLGRGPCAALLLLGLGLSTVTGLHCVGDTYPSNDRCCHECRPGNGMVSRCSRSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MCVGARRLGRGPCAALLLLGLGLSTVTGLHCVGDTYPSNDRCCHECRPGNGMVSRCSRSQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 NTVCRPCGPGFYNDVVSSKPCKPCTWCNLRSGSERKQLCTATQDTVCRCRAGTQPLDSYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NTVCRPCGPGFYNDVVSSKPCKPCTWCNLRSGSERKQLCTATQDTVCRCRAGTQPLDSYK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 PGVDCAPCPPGHFSPGDNQACKPWTNCTLAGKHTLQPASNSSDAICEDRDPPATQPQETQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PGVDCAPCPPGHFSPGDNQACKPWTNCTLAGKHTLQPASNSSDAICEDRDPPATQPQETQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 GPPARPITVQPTEAWPRTSQGPSTRPVEVPGGRAVAAILGLGLVLGLLGPLAILLALYLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GPPARPITVQPTEAWPRTSQGPSTRPVEVPGGRAVAAILGLGLVLGLLGPLAILLALYLL
              190       200       210       220       230       240

              250       260       270       
pF1KE1 RRDQRLPPDAHKPPGGGSFRTPIQEEQADAHSTLAKI
       :::::::::::::::::::::::::::::::::::::
CCDS11 RRDQRLPPDAHKPPGGGSFRTPIQEEQADAHSTLAKI
              250       260       270       




277 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 19:35:20 2016 done: Sun Nov  6 19:35:20 2016
 Total Scan time:  2.920 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]