FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6694, 398 aa 1>>>pF1KE6694 398 - 398 aa - 398 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.1378+/-0.000283; mu= 15.4910+/- 0.018 mean_var=118.8657+/-24.149, 0's: 0 Z-trim(121.6): 2 B-trim: 1889 in 1/54 Lambda= 0.117638 statistics sampled from 38475 (38477) to 38475 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.779), E-opt: 0.2 (0.451), width: 16 Scan time: 5.990 The best scores are: opt bits E(85289) NP_001035363 (OMIM: 611017) peroxisomal leader pep ( 398) 2788 483.6 3.7e-136 NP_775826 (OMIM: 611017) peroxisomal leader peptid ( 566) 2712 470.8 3.6e-132 >>NP_001035363 (OMIM: 611017) peroxisomal leader peptide (398 aa) initn: 2788 init1: 2788 opt: 2788 Z-score: 2565.5 bits: 483.6 E(85289): 3.7e-136 Smith-Waterman score: 2788; 100.0% identity (100.0% similar) in 398 aa overlap (1-398:1-398) 10 20 30 40 50 60 pF1KE6 MRRQWGSAMRAAEQAGCMVSASRAGQPEAGPWSCSGVILSRSPGLVLCHGGIFVPFLRAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MRRQWGSAMRAAEQAGCMVSASRAGQPEAGPWSCSGVILSRSPGLVLCHGGIFVPFLRAG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 SEVLTAAGAVFLPGDSCRDDLRLHVQWAPTAAGPGGGAERGRPGLCTPQCASLEPGPPAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SEVLTAAGAVFLPGDSCRDDLRLHVQWAPTAAGPGGGAERGRPGLCTPQCASLEPGPPAP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 SRGRPLQPRLPAELLLLLSCPAFWAHFARLFGDEAAEQWRFSSAARDDEVSEDEEADQLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SRGRPLQPRLPAELLLLLSCPAFWAHFARLFGDEAAEQWRFSSAARDDEVSEDEEADQLR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 ALGWFALLGVRLGQEEVEEERGPAMAVSPLGAVPKGAPLLVCGSPFGAFCPDIFLNTLSC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ALGWFALLGVRLGQEEVEEERGPAMAVSPLGAVPKGAPLLVCGSPFGAFCPDIFLNTLSC 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 GVLSNVAGPLLLTDARCLPGTEGGGVFTARPAGALVALVVAPLCWKAGEWVGFTLLCAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GVLSNVAGPLLLTDARCLPGTEGGGVFTARPAGALVALVVAPLCWKAGEWVGFTLLCAAA 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE6 PLFRAARDALHRLPHSTAALAALLPPEVGVPWGLPLRDSGPLWAAAAVLVECGTVWGSGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PLFRAARDALHRLPHSTAALAALLPPEVGVPWGLPLRDSGPLWAAAAVLVECGTVWGSGV 310 320 330 340 350 360 370 380 390 pF1KE6 AVAPRLVVTCRHVSPREAARVLVRSTTPKHNHQQHPGQ :::::::::::::::::::::::::::::::::::::: NP_001 AVAPRLVVTCRHVSPREAARVLVRSTTPKHNHQQHPGQ 370 380 390 >>NP_775826 (OMIM: 611017) peroxisomal leader peptide-pr (566 aa) initn: 2712 init1: 2712 opt: 2712 Z-score: 2493.8 bits: 470.8 E(85289): 3.6e-132 Smith-Waterman score: 2712; 100.0% identity (100.0% similar) in 389 aa overlap (1-389:1-389) 10 20 30 40 50 60 pF1KE6 MRRQWGSAMRAAEQAGCMVSASRAGQPEAGPWSCSGVILSRSPGLVLCHGGIFVPFLRAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_775 MRRQWGSAMRAAEQAGCMVSASRAGQPEAGPWSCSGVILSRSPGLVLCHGGIFVPFLRAG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 SEVLTAAGAVFLPGDSCRDDLRLHVQWAPTAAGPGGGAERGRPGLCTPQCASLEPGPPAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_775 SEVLTAAGAVFLPGDSCRDDLRLHVQWAPTAAGPGGGAERGRPGLCTPQCASLEPGPPAP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 SRGRPLQPRLPAELLLLLSCPAFWAHFARLFGDEAAEQWRFSSAARDDEVSEDEEADQLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_775 SRGRPLQPRLPAELLLLLSCPAFWAHFARLFGDEAAEQWRFSSAARDDEVSEDEEADQLR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 ALGWFALLGVRLGQEEVEEERGPAMAVSPLGAVPKGAPLLVCGSPFGAFCPDIFLNTLSC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_775 ALGWFALLGVRLGQEEVEEERGPAMAVSPLGAVPKGAPLLVCGSPFGAFCPDIFLNTLSC 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 GVLSNVAGPLLLTDARCLPGTEGGGVFTARPAGALVALVVAPLCWKAGEWVGFTLLCAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_775 GVLSNVAGPLLLTDARCLPGTEGGGVFTARPAGALVALVVAPLCWKAGEWVGFTLLCAAA 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE6 PLFRAARDALHRLPHSTAALAALLPPEVGVPWGLPLRDSGPLWAAAAVLVECGTVWGSGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_775 PLFRAARDALHRLPHSTAALAALLPPEVGVPWGLPLRDSGPLWAAAAVLVECGTVWGSGV 310 320 330 340 350 360 370 380 390 pF1KE6 AVAPRLVVTCRHVSPREAARVLVRSTTPKHNHQQHPGQ ::::::::::::::::::::::::::::: NP_775 AVAPRLVVTCRHVSPREAARVLVRSTTPKSVAIWGRVVFATQETCPYDIAVVSLEEDLDD 370 380 390 400 410 420 398 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 15:28:33 2016 done: Tue Nov 8 15:28:34 2016 Total Scan time: 5.990 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]