Result of FASTA (omim) for
pFN21AE6690
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6690, 299 aa
1>>>pF1KE6690 299 - 299 aa - 299 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9926+/-0.000323; mu= 12.8132+/- 0.020
mean_var=86.4962+/-17.697, 0's: 0 Z-trim(116.4): 15 B-trim: 1492 in 1/56
Lambda= 0.137904
statistics sampled from 27575 (27586) to 27575 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.704), E-opt: 0.2 (0.323), width: 16
Scan time: 6.460
The best scores are: opt bits E(85289)
XP_016872810 (OMIM: 236680,610693) PREDICTED: hydr ( 299) 2037 414.8 1e-115
XP_016872809 (OMIM: 236680,610693) PREDICTED: hydr ( 299) 2037 414.8 1e-115
XP_006718840 (OMIM: 236680,610693) PREDICTED: hydr ( 299) 2037 414.8 1e-115
XP_011540961 (OMIM: 236680,610693) PREDICTED: hydr ( 299) 2037 414.8 1e-115
XP_005271487 (OMIM: 236680,610693) PREDICTED: hydr ( 299) 2037 414.8 1e-115
NP_659451 (OMIM: 236680,610693) hydrolethalus synd ( 299) 2037 414.8 1e-115
NP_001128265 (OMIM: 236680,610693) hydrolethalus s ( 299) 2037 414.8 1e-115
>>XP_016872810 (OMIM: 236680,610693) PREDICTED: hydrolet (299 aa)
initn: 2037 init1: 2037 opt: 2037 Z-score: 2198.5 bits: 414.8 E(85289): 1e-115
Smith-Waterman score: 2037; 100.0% identity (100.0% similar) in 299 aa overlap (1-299:1-299)
10 20 30 40 50 60
pF1KE6 MEELLPDGQIWANMDPEERMLAAATAFTHICAGQGEGDVRREAQSIQYDPYSKASVAPGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MEELLPDGQIWANMDPEERMLAAATAFTHICAGQGEGDVRREAQSIQYDPYSKASVAPGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 RPALPVQLQYPHVESNVPSETVSEASQRLRKPVMKRKVLRRKPDGEVLVTDESIISESES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RPALPVQLQYPHVESNVPSETVSEASQRLRKPVMKRKVLRRKPDGEVLVTDESIISESES
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 GTENDQDLWDLRQRLMNVQFQEDKESSFDVSQKFNLPHEYQGISQDQLICSLQREGMGSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GTENDQDLWDLRQRLMNVQFQEDKESSFDVSQKFNLPHEYQGISQDQLICSLQREGMGSP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 AYEQDLIVASRPKSFILPKLDQLSRNRGKTDRVARYFEYKRDWDSIRLPGEDHRKELRWG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AYEQDLIVASRPKSFILPKLDQLSRNRGKTDRVARYFEYKRDWDSIRLPGEDHRKELRWG
190 200 210 220 230 240
250 260 270 280 290
pF1KE6 VREQMLCRAEPQSKPQHIYVPNNYLVPTEKKRSALRWGVRCDLANGVIPRKLPFPLSPS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VREQMLCRAEPQSKPQHIYVPNNYLVPTEKKRSALRWGVRCDLANGVIPRKLPFPLSPS
250 260 270 280 290
>>XP_016872809 (OMIM: 236680,610693) PREDICTED: hydrolet (299 aa)
initn: 2037 init1: 2037 opt: 2037 Z-score: 2198.5 bits: 414.8 E(85289): 1e-115
Smith-Waterman score: 2037; 100.0% identity (100.0% similar) in 299 aa overlap (1-299:1-299)
10 20 30 40 50 60
pF1KE6 MEELLPDGQIWANMDPEERMLAAATAFTHICAGQGEGDVRREAQSIQYDPYSKASVAPGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MEELLPDGQIWANMDPEERMLAAATAFTHICAGQGEGDVRREAQSIQYDPYSKASVAPGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 RPALPVQLQYPHVESNVPSETVSEASQRLRKPVMKRKVLRRKPDGEVLVTDESIISESES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RPALPVQLQYPHVESNVPSETVSEASQRLRKPVMKRKVLRRKPDGEVLVTDESIISESES
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 GTENDQDLWDLRQRLMNVQFQEDKESSFDVSQKFNLPHEYQGISQDQLICSLQREGMGSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GTENDQDLWDLRQRLMNVQFQEDKESSFDVSQKFNLPHEYQGISQDQLICSLQREGMGSP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 AYEQDLIVASRPKSFILPKLDQLSRNRGKTDRVARYFEYKRDWDSIRLPGEDHRKELRWG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AYEQDLIVASRPKSFILPKLDQLSRNRGKTDRVARYFEYKRDWDSIRLPGEDHRKELRWG
190 200 210 220 230 240
250 260 270 280 290
pF1KE6 VREQMLCRAEPQSKPQHIYVPNNYLVPTEKKRSALRWGVRCDLANGVIPRKLPFPLSPS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VREQMLCRAEPQSKPQHIYVPNNYLVPTEKKRSALRWGVRCDLANGVIPRKLPFPLSPS
250 260 270 280 290
>>XP_006718840 (OMIM: 236680,610693) PREDICTED: hydrolet (299 aa)
initn: 2037 init1: 2037 opt: 2037 Z-score: 2198.5 bits: 414.8 E(85289): 1e-115
Smith-Waterman score: 2037; 100.0% identity (100.0% similar) in 299 aa overlap (1-299:1-299)
10 20 30 40 50 60
pF1KE6 MEELLPDGQIWANMDPEERMLAAATAFTHICAGQGEGDVRREAQSIQYDPYSKASVAPGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MEELLPDGQIWANMDPEERMLAAATAFTHICAGQGEGDVRREAQSIQYDPYSKASVAPGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 RPALPVQLQYPHVESNVPSETVSEASQRLRKPVMKRKVLRRKPDGEVLVTDESIISESES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RPALPVQLQYPHVESNVPSETVSEASQRLRKPVMKRKVLRRKPDGEVLVTDESIISESES
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 GTENDQDLWDLRQRLMNVQFQEDKESSFDVSQKFNLPHEYQGISQDQLICSLQREGMGSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GTENDQDLWDLRQRLMNVQFQEDKESSFDVSQKFNLPHEYQGISQDQLICSLQREGMGSP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 AYEQDLIVASRPKSFILPKLDQLSRNRGKTDRVARYFEYKRDWDSIRLPGEDHRKELRWG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AYEQDLIVASRPKSFILPKLDQLSRNRGKTDRVARYFEYKRDWDSIRLPGEDHRKELRWG
190 200 210 220 230 240
250 260 270 280 290
pF1KE6 VREQMLCRAEPQSKPQHIYVPNNYLVPTEKKRSALRWGVRCDLANGVIPRKLPFPLSPS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VREQMLCRAEPQSKPQHIYVPNNYLVPTEKKRSALRWGVRCDLANGVIPRKLPFPLSPS
250 260 270 280 290
>>XP_011540961 (OMIM: 236680,610693) PREDICTED: hydrolet (299 aa)
initn: 2037 init1: 2037 opt: 2037 Z-score: 2198.5 bits: 414.8 E(85289): 1e-115
Smith-Waterman score: 2037; 100.0% identity (100.0% similar) in 299 aa overlap (1-299:1-299)
10 20 30 40 50 60
pF1KE6 MEELLPDGQIWANMDPEERMLAAATAFTHICAGQGEGDVRREAQSIQYDPYSKASVAPGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MEELLPDGQIWANMDPEERMLAAATAFTHICAGQGEGDVRREAQSIQYDPYSKASVAPGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 RPALPVQLQYPHVESNVPSETVSEASQRLRKPVMKRKVLRRKPDGEVLVTDESIISESES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RPALPVQLQYPHVESNVPSETVSEASQRLRKPVMKRKVLRRKPDGEVLVTDESIISESES
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 GTENDQDLWDLRQRLMNVQFQEDKESSFDVSQKFNLPHEYQGISQDQLICSLQREGMGSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GTENDQDLWDLRQRLMNVQFQEDKESSFDVSQKFNLPHEYQGISQDQLICSLQREGMGSP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 AYEQDLIVASRPKSFILPKLDQLSRNRGKTDRVARYFEYKRDWDSIRLPGEDHRKELRWG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AYEQDLIVASRPKSFILPKLDQLSRNRGKTDRVARYFEYKRDWDSIRLPGEDHRKELRWG
190 200 210 220 230 240
250 260 270 280 290
pF1KE6 VREQMLCRAEPQSKPQHIYVPNNYLVPTEKKRSALRWGVRCDLANGVIPRKLPFPLSPS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VREQMLCRAEPQSKPQHIYVPNNYLVPTEKKRSALRWGVRCDLANGVIPRKLPFPLSPS
250 260 270 280 290
>>XP_005271487 (OMIM: 236680,610693) PREDICTED: hydrolet (299 aa)
initn: 2037 init1: 2037 opt: 2037 Z-score: 2198.5 bits: 414.8 E(85289): 1e-115
Smith-Waterman score: 2037; 100.0% identity (100.0% similar) in 299 aa overlap (1-299:1-299)
10 20 30 40 50 60
pF1KE6 MEELLPDGQIWANMDPEERMLAAATAFTHICAGQGEGDVRREAQSIQYDPYSKASVAPGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MEELLPDGQIWANMDPEERMLAAATAFTHICAGQGEGDVRREAQSIQYDPYSKASVAPGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 RPALPVQLQYPHVESNVPSETVSEASQRLRKPVMKRKVLRRKPDGEVLVTDESIISESES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RPALPVQLQYPHVESNVPSETVSEASQRLRKPVMKRKVLRRKPDGEVLVTDESIISESES
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 GTENDQDLWDLRQRLMNVQFQEDKESSFDVSQKFNLPHEYQGISQDQLICSLQREGMGSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GTENDQDLWDLRQRLMNVQFQEDKESSFDVSQKFNLPHEYQGISQDQLICSLQREGMGSP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 AYEQDLIVASRPKSFILPKLDQLSRNRGKTDRVARYFEYKRDWDSIRLPGEDHRKELRWG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AYEQDLIVASRPKSFILPKLDQLSRNRGKTDRVARYFEYKRDWDSIRLPGEDHRKELRWG
190 200 210 220 230 240
250 260 270 280 290
pF1KE6 VREQMLCRAEPQSKPQHIYVPNNYLVPTEKKRSALRWGVRCDLANGVIPRKLPFPLSPS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VREQMLCRAEPQSKPQHIYVPNNYLVPTEKKRSALRWGVRCDLANGVIPRKLPFPLSPS
250 260 270 280 290
>>NP_659451 (OMIM: 236680,610693) hydrolethalus syndrome (299 aa)
initn: 2037 init1: 2037 opt: 2037 Z-score: 2198.5 bits: 414.8 E(85289): 1e-115
Smith-Waterman score: 2037; 100.0% identity (100.0% similar) in 299 aa overlap (1-299:1-299)
10 20 30 40 50 60
pF1KE6 MEELLPDGQIWANMDPEERMLAAATAFTHICAGQGEGDVRREAQSIQYDPYSKASVAPGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_659 MEELLPDGQIWANMDPEERMLAAATAFTHICAGQGEGDVRREAQSIQYDPYSKASVAPGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 RPALPVQLQYPHVESNVPSETVSEASQRLRKPVMKRKVLRRKPDGEVLVTDESIISESES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_659 RPALPVQLQYPHVESNVPSETVSEASQRLRKPVMKRKVLRRKPDGEVLVTDESIISESES
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 GTENDQDLWDLRQRLMNVQFQEDKESSFDVSQKFNLPHEYQGISQDQLICSLQREGMGSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_659 GTENDQDLWDLRQRLMNVQFQEDKESSFDVSQKFNLPHEYQGISQDQLICSLQREGMGSP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 AYEQDLIVASRPKSFILPKLDQLSRNRGKTDRVARYFEYKRDWDSIRLPGEDHRKELRWG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_659 AYEQDLIVASRPKSFILPKLDQLSRNRGKTDRVARYFEYKRDWDSIRLPGEDHRKELRWG
190 200 210 220 230 240
250 260 270 280 290
pF1KE6 VREQMLCRAEPQSKPQHIYVPNNYLVPTEKKRSALRWGVRCDLANGVIPRKLPFPLSPS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_659 VREQMLCRAEPQSKPQHIYVPNNYLVPTEKKRSALRWGVRCDLANGVIPRKLPFPLSPS
250 260 270 280 290
>>NP_001128265 (OMIM: 236680,610693) hydrolethalus syndr (299 aa)
initn: 2037 init1: 2037 opt: 2037 Z-score: 2198.5 bits: 414.8 E(85289): 1e-115
Smith-Waterman score: 2037; 100.0% identity (100.0% similar) in 299 aa overlap (1-299:1-299)
10 20 30 40 50 60
pF1KE6 MEELLPDGQIWANMDPEERMLAAATAFTHICAGQGEGDVRREAQSIQYDPYSKASVAPGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEELLPDGQIWANMDPEERMLAAATAFTHICAGQGEGDVRREAQSIQYDPYSKASVAPGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 RPALPVQLQYPHVESNVPSETVSEASQRLRKPVMKRKVLRRKPDGEVLVTDESIISESES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RPALPVQLQYPHVESNVPSETVSEASQRLRKPVMKRKVLRRKPDGEVLVTDESIISESES
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 GTENDQDLWDLRQRLMNVQFQEDKESSFDVSQKFNLPHEYQGISQDQLICSLQREGMGSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GTENDQDLWDLRQRLMNVQFQEDKESSFDVSQKFNLPHEYQGISQDQLICSLQREGMGSP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 AYEQDLIVASRPKSFILPKLDQLSRNRGKTDRVARYFEYKRDWDSIRLPGEDHRKELRWG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AYEQDLIVASRPKSFILPKLDQLSRNRGKTDRVARYFEYKRDWDSIRLPGEDHRKELRWG
190 200 210 220 230 240
250 260 270 280 290
pF1KE6 VREQMLCRAEPQSKPQHIYVPNNYLVPTEKKRSALRWGVRCDLANGVIPRKLPFPLSPS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VREQMLCRAEPQSKPQHIYVPNNYLVPTEKKRSALRWGVRCDLANGVIPRKLPFPLSPS
250 260 270 280 290
299 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 15:26:24 2016 done: Tue Nov 8 15:26:25 2016
Total Scan time: 6.460 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]