Result of FASTA (omim) for
pFN21AE6596
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6596, 64 aa
1>>>pF1KE6596 64 - 64 aa - 64 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.2110+/-0.000261; mu= 11.3674+/- 0.016
mean_var=41.7775+/- 8.240, 0's: 0 Z-trim(118.7): 11 B-trim: 0 in 0/54
Lambda= 0.198428
statistics sampled from 31918 (31929) to 31918 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.783), E-opt: 0.2 (0.374), width: 16
Scan time: 2.870
The best scores are: opt bits E(85289)
NP_001304747 (OMIM: 611459) sodium/bile acid cotra ( 64) 402 121.1 1.3e-28
XP_016864180 (OMIM: 611459) PREDICTED: sodium/bile ( 149) 394 119.0 1.2e-27
NP_115504 (OMIM: 611459) sodium/bile acid cotransp ( 159) 394 119.0 1.3e-27
XP_016864179 (OMIM: 611459) PREDICTED: sodium/bile ( 163) 394 119.0 1.3e-27
XP_016864178 (OMIM: 611459) PREDICTED: sodium/bile ( 180) 394 119.0 1.5e-27
NP_001304745 (OMIM: 611459) sodium/bile acid cotra ( 327) 394 119.2 2.4e-27
NP_001025169 (OMIM: 611459) sodium/bile acid cotra ( 340) 394 119.2 2.5e-27
XP_011530613 (OMIM: 611459) PREDICTED: sodium/bile ( 345) 394 119.2 2.5e-27
XP_016864181 (OMIM: 611459) PREDICTED: sodium/bile ( 85) 388 117.1 2.6e-27
NP_001304746 (OMIM: 611459) sodium/bile acid cotra ( 85) 388 117.1 2.6e-27
NP_001287771 (OMIM: 611459) sodium/bile acid cotra ( 358) 394 119.2 2.6e-27
>>NP_001304747 (OMIM: 611459) sodium/bile acid cotranspo (64 aa)
initn: 402 init1: 402 opt: 402 Z-score: 634.9 bits: 121.1 E(85289): 1.3e-28
Smith-Waterman score: 402; 100.0% identity (100.0% similar) in 64 aa overlap (1-64:1-64)
10 20 30 40 50 60
pF1KE6 MRLLERMRKDWFMVGIVLAIAGAKLEPSIGVNGGPLKPEITVSYIAVATIFFNSGLSLKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MRLLERMRKDWFMVGIVLAIAGAKLEPSIGVNGGPLKPEITVSYIAVATIFFNSGLSLKT
10 20 30 40 50 60
pF1KE6 ELLT
::::
NP_001 ELLT
>>XP_016864180 (OMIM: 611459) PREDICTED: sodium/bile aci (149 aa)
initn: 394 init1: 394 opt: 394 Z-score: 617.0 bits: 119.0 E(85289): 1.2e-27
Smith-Waterman score: 394; 98.4% identity (98.4% similar) in 64 aa overlap (1-64:1-64)
10 20 30 40 50 60
pF1KE6 MRLLERMRKDWFMVGIVLAIAGAKLEPSIGVNGGPLKPEITVSYIAVATIFFNSGLSLKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MRLLERMRKDWFMVGIVLAIAGAKLEPSIGVNGGPLKPEITVSYIAVATIFFNSGLSLKT
10 20 30 40 50 60
pF1KE6 ELLT
: ::
XP_016 EELTSALVHLKLHLFIQIFTLAFFPATIWLFLQLLSITPINEWLLKGLQTVGCMPPPVSS
70 80 90 100 110 120
>>NP_115504 (OMIM: 611459) sodium/bile acid cotransporte (159 aa)
initn: 394 init1: 394 opt: 394 Z-score: 616.6 bits: 119.0 E(85289): 1.3e-27
Smith-Waterman score: 394; 98.4% identity (98.4% similar) in 64 aa overlap (1-64:1-64)
10 20 30 40 50 60
pF1KE6 MRLLERMRKDWFMVGIVLAIAGAKLEPSIGVNGGPLKPEITVSYIAVATIFFNSGLSLKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 MRLLERMRKDWFMVGIVLAIAGAKLEPSIGVNGGPLKPEITVSYIAVATIFFNSGLSLKT
10 20 30 40 50 60
pF1KE6 ELLT
: ::
NP_115 EELTSALVHLKLHLFIQIFTLAFFPATIWLFLQLLSITPINEWLLKGLQTVGCMPPPVSS
70 80 90 100 110 120
>>XP_016864179 (OMIM: 611459) PREDICTED: sodium/bile aci (163 aa)
initn: 394 init1: 394 opt: 394 Z-score: 616.5 bits: 119.0 E(85289): 1.3e-27
Smith-Waterman score: 394; 98.4% identity (98.4% similar) in 64 aa overlap (1-64:1-64)
10 20 30 40 50 60
pF1KE6 MRLLERMRKDWFMVGIVLAIAGAKLEPSIGVNGGPLKPEITVSYIAVATIFFNSGLSLKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MRLLERMRKDWFMVGIVLAIAGAKLEPSIGVNGGPLKPEITVSYIAVATIFFNSGLSLKT
10 20 30 40 50 60
pF1KE6 ELLT
: ::
XP_016 EELTSALVHLKLHLFIQIFTLAFFPATIWLFLQLLSITPINEWLLKGLQTVGCMPPPVSS
70 80 90 100 110 120
>>XP_016864178 (OMIM: 611459) PREDICTED: sodium/bile aci (180 aa)
initn: 394 init1: 394 opt: 394 Z-score: 615.8 bits: 119.0 E(85289): 1.5e-27
Smith-Waterman score: 394; 98.4% identity (98.4% similar) in 64 aa overlap (1-64:1-64)
10 20 30 40 50 60
pF1KE6 MRLLERMRKDWFMVGIVLAIAGAKLEPSIGVNGGPLKPEITVSYIAVATIFFNSGLSLKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MRLLERMRKDWFMVGIVLAIAGAKLEPSIGVNGGPLKPEITVSYIAVATIFFNSGLSLKT
10 20 30 40 50 60
pF1KE6 ELLT
: ::
XP_016 EELTSALVHLKLHLFIQIFTLAFFPATIWLFLQLLSITPINEWLLKGLQTVGCMPPPVSS
70 80 90 100 110 120
>>NP_001304745 (OMIM: 611459) sodium/bile acid cotranspo (327 aa)
initn: 394 init1: 394 opt: 394 Z-score: 611.9 bits: 119.2 E(85289): 2.4e-27
Smith-Waterman score: 394; 98.4% identity (98.4% similar) in 64 aa overlap (1-64:1-64)
10 20 30 40 50 60
pF1KE6 MRLLERMRKDWFMVGIVLAIAGAKLEPSIGVNGGPLKPEITVSYIAVATIFFNSGLSLKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MRLLERMRKDWFMVGIVLAIAGAKLEPSIGVNGGPLKPEITVSYIAVATIFFNSGLSLKT
10 20 30 40 50 60
pF1KE6 ELLT
: ::
NP_001 EELTSALVHLKLHLFIQIFTLAFFPATIWLFLQLLSITPINEWLLKGLQTVGCMPPPVSS
70 80 90 100 110 120
>>NP_001025169 (OMIM: 611459) sodium/bile acid cotranspo (340 aa)
initn: 394 init1: 394 opt: 394 Z-score: 611.7 bits: 119.2 E(85289): 2.5e-27
Smith-Waterman score: 394; 98.4% identity (98.4% similar) in 64 aa overlap (1-64:1-64)
10 20 30 40 50 60
pF1KE6 MRLLERMRKDWFMVGIVLAIAGAKLEPSIGVNGGPLKPEITVSYIAVATIFFNSGLSLKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MRLLERMRKDWFMVGIVLAIAGAKLEPSIGVNGGPLKPEITVSYIAVATIFFNSGLSLKT
10 20 30 40 50 60
pF1KE6 ELLT
: ::
NP_001 EELTSALVHLKLHLFIQIFTLAFFPATIWLFLQLLSITPINEWLLKGLQTVGCMPPPVSS
70 80 90 100 110 120
>>XP_011530613 (OMIM: 611459) PREDICTED: sodium/bile aci (345 aa)
initn: 394 init1: 394 opt: 394 Z-score: 611.6 bits: 119.2 E(85289): 2.5e-27
Smith-Waterman score: 394; 98.4% identity (98.4% similar) in 64 aa overlap (1-64:1-64)
10 20 30 40 50 60
pF1KE6 MRLLERMRKDWFMVGIVLAIAGAKLEPSIGVNGGPLKPEITVSYIAVATIFFNSGLSLKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MRLLERMRKDWFMVGIVLAIAGAKLEPSIGVNGGPLKPEITVSYIAVATIFFNSGLSLKT
10 20 30 40 50 60
pF1KE6 ELLT
: ::
XP_011 EELTSALVHLKLHLFIQIFTLAFFPATIWLFLQLLSITPINEWLLKGLQTVGCMPPPVSS
70 80 90 100 110 120
>>XP_016864181 (OMIM: 611459) PREDICTED: sodium/bile aci (85 aa)
initn: 388 init1: 388 opt: 388 Z-score: 611.4 bits: 117.1 E(85289): 2.6e-27
Smith-Waterman score: 388; 98.4% identity (100.0% similar) in 62 aa overlap (1-62:1-62)
10 20 30 40 50 60
pF1KE6 MRLLERMRKDWFMVGIVLAIAGAKLEPSIGVNGGPLKPEITVSYIAVATIFFNSGLSLKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MRLLERMRKDWFMVGIVLAIAGAKLEPSIGVNGGPLKPEITVSYIAVATIFFNSGLSLKT
10 20 30 40 50 60
pF1KE6 ELLT
:.
XP_016 EFADSRLHASACVFCSDFNQGSWWK
70 80
>>NP_001304746 (OMIM: 611459) sodium/bile acid cotranspo (85 aa)
initn: 388 init1: 388 opt: 388 Z-score: 611.4 bits: 117.1 E(85289): 2.6e-27
Smith-Waterman score: 388; 98.4% identity (100.0% similar) in 62 aa overlap (1-62:1-62)
10 20 30 40 50 60
pF1KE6 MRLLERMRKDWFMVGIVLAIAGAKLEPSIGVNGGPLKPEITVSYIAVATIFFNSGLSLKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MRLLERMRKDWFMVGIVLAIAGAKLEPSIGVNGGPLKPEITVSYIAVATIFFNSGLSLKT
10 20 30 40 50 60
pF1KE6 ELLT
:.
NP_001 EFADSRLHASACVFCSDFNQGSWWK
70 80
64 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 14:40:08 2016 done: Tue Nov 8 14:40:09 2016
Total Scan time: 2.870 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]