FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6572, 123 aa
  1>>>pF1KE6572 123 - 123 aa - 123 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7751+/-0.000292; mu= 13.3668+/- 0.018
 mean_var=54.6818+/-11.087, 0's: 0 Z-trim(118.2): 8  B-trim: 825 in 1/52
 Lambda= 0.173441
 statistics sampled from 30965 (30972) to 30965 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.754), E-opt: 0.2 (0.363), width:  16
 Scan time:  4.450

The best scores are:                                      opt bits E(85289)
NP_057057 (OMIM: 137035,616461) galanin peptides p ( 123)  791 205.0 2.5e-53
NP_149097 (OMIM: 611178) galanin-like peptide isof ( 116)  134 40.6 0.00073


>>NP_057057 (OMIM: 137035,616461) galanin peptides prepr  (123 aa)
 initn: 791 init1: 791 opt: 791  Z-score: 1078.4  bits: 205.0 E(85289): 2.5e-53
Smith-Waterman score: 791; 100.0% identity (100.0% similar) in 123 aa overlap (1-123:1-123)

               10        20        30        40        50        60
pF1KE6 MARGSALLLASLLLAAALSASAGLWSPAKEKRGWTLNSAGYLLGPHAVGNHRSFSDKNGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MARGSALLLASLLLAAALSASAGLWSPAKEKRGWTLNSAGYLLGPHAVGNHRSFSDKNGL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 TSKRELRPEDDMKPGSFDRSIPENNIMRTIIEFLSFLHLKEAGALDRLLDLPAAASSEDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 TSKRELRPEDDMKPGSFDRSIPENNIMRTIIEFLSFLHLKEAGALDRLLDLPAAASSEDI
               70        80        90       100       110       120

          
pF1KE6 ERS
       :::
NP_057 ERS
          

>>NP_149097 (OMIM: 611178) galanin-like peptide isoform   (116 aa)
 initn: 132 init1:  94 opt: 134  Z-score: 190.3  bits: 40.6 E(85289): 0.00073
Smith-Waterman score: 134; 36.4% identity (57.9% similar) in 121 aa overlap (7-123:10-116)

                  10        20        30         40        50      
pF1KE6    MARGSALLLASLLLAAALSASAGLWSPAKEKRG-WTLNSAGYLLGPHAVGNHRSFSD
                :::. ::  :   :::    ::.. :: ::::::::::::  : .  ...:
NP_149 MAPPSVPLVLLLVLLLSLAETPASA----PAHRGRGGWTLNSAGYLLGP--VLHLPQMGD
               10        20            30        40          50    

         60          70         80        90       100       110   
pF1KE6 KNGLTSKRELRPE--DDMKP-GSFDRSIPENNIMRTIIEFLSFLHLKEAGALDRLLDLPA
       ..:   :::   :  :  :   ..  : : .   :...: ..  .. . : :.  . .: 
NP_149 QDG---KRETALEILDLWKAIDGLPYSHPPQPSKRNVMETFAKPEIGDLGMLS--MKIP-
              60        70        80        90       100           

           120   
pF1KE6 AASSEDIERS
         . ::. .:
NP_149 --KEEDVLKS
        110      




123 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:30:49 2016 done: Tue Nov  8 14:30:50 2016
 Total Scan time:  4.450 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]