FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6491, 600 aa
  1>>>pF1KE6491 600 - 600 aa - 600 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.2695+/-0.000865; mu= 8.4256+/- 0.053
 mean_var=215.5199+/-42.799, 0's: 0 Z-trim(114.7): 7  B-trim: 0 in 0/53
 Lambda= 0.087364
 statistics sampled from 15253 (15254) to 15253 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.773), E-opt: 0.2 (0.469), width:  16
 Scan time:  3.120

The best scores are:                                      opt bits E(32554)
CCDS32926.1 DCAF15 gene_id:90379|Hs108|chr19       ( 600) 4107 530.3 2.7e-150


>>CCDS32926.1 DCAF15 gene_id:90379|Hs108|chr19            (600 aa)
 initn: 4107 init1: 4107 opt: 4107  Z-score: 2811.7  bits: 530.3 E(32554): 2.7e-150
Smith-Waterman score: 4107; 99.8% identity (100.0% similar) in 600 aa overlap (1-600:1-600)

               10        20        30        40        50        60
pF1KE6 MAPSSKSERNSGAGSGGGGPGGAGGKRAAGRRREHVLKQLERVKISGQLSPRLFRKLPPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MAPSSKSERNSGAGSGGGGPGGAGGKRAAGRRREHVLKQLERVKISGQLSPRLFRKLPPR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 VCVSLKNIVDEDFLYAGHIFLGFSKCGRYVLSYTSSSGDDDFSFYIYHLYWWEFNVHSKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VCVSLKNIVDEDFLYAGHIFLGFSKCGRYVLSYTSSSGDDDFSFYIYHLYWWEFNVHSKL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 KLVRQVRLFQDEEIYSDLYLTVCEWPSDASKVIVFGFNTRSANGMLMNMMMMSDENHRDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KLVRQVRLFQDEEIYSDLYLTVCEWPSDASKVIVFGFNTRSANGMLMNMMMMSDENHRDI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 YVSTVAVPPPGRCAACQDASRAHPGDPNAQCLRHGFMLHTKYQVVYPFPTFQPAFQLKKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 YVSTVAVPPPGRCAACQDASRAHPGDPNAQCLRHGFMLHTKYQVVYPFPTFQPAFQLKKD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 QVVLLNTSYSLVACAVSVHSAGDRSFCQILYDHSTCPLAPASPPEPQSPELPPALPSFCP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QVVLLNTSYSLVACAVSVHSAGDRSFCQILYDHSTCPLAPASPPEPQSPELPPALPSFCP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 EAAPARSSGSPEPSPAIAKAKEFVADIFRRAKEAKGGVPEEARPALCPGPSGSRCRAHSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EAAPARSSGSPEPSPAIAKAKEFVADIFRRAKEAKGGVPEEARPALCPGPSGSRCRAHSE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE6 PLALCGETAPRDSPPASEAPASEPGYVNYTKLYYVLESGEGTEPEDELEDDKISLPFVVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PLALCGETAPRDSPPASEAPASEPGYVNYTKLYYVLESGEGTEPEDELEDDKISLPFVVT
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE6 DLRGRNLRPMRERTAVQGQYLTVEQLTLDFEYVINEVIRHDATWGHQFCSFSDYDIVILE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DLRGRNLRPMRERTAVQGQYLTVEQLTLDFEYVINEVIRHDATWGHQFCSFSDYDIVILE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE6 VCPETNQVLINIGLLLLAFPSPTEEGQLRPKTYHTSLKVAWDLNTGIFETVSVGDLTEVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VCPETNQVLINIGLLLLAFPSPTEEGQLRPKTYHTSLKVAWDLNTGIFETVSVGDLTEVK
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE6 GQTSGSVWSSYRKSCVDMVMKWLVPESSGRYVNRMTNEALHKGCSLKVLVDSERYTWIVL
       :::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::
CCDS32 GQTSGSVWSSYRKSCVDMVMKWLVPESSGRYVNRMTNEALHKGCSLKVLADSERYTWIVL
              550       560       570       580       590       600




600 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 13:49:42 2016 done: Tue Nov  8 13:49:43 2016
 Total Scan time:  3.120 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]