FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6445, 521 aa
  1>>>pF1KE6445 521 - 521 aa - 521 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7427+/-0.00091; mu= 16.4962+/- 0.055
 mean_var=74.7502+/-14.942, 0's: 0 Z-trim(105.9): 25  B-trim: 0 in 0/51
 Lambda= 0.148343
 statistics sampled from 8655 (8662) to 8655 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.641), E-opt: 0.2 (0.266), width:  16
 Scan time:  2.000

The best scores are:                                      opt bits E(32554)
CCDS5377.1 FAM126A gene_id:84668|Hs108|chr7        ( 521) 3412 739.8 1.8e-213
CCDS2335.1 FAM126B gene_id:285172|Hs108|chr2       ( 530) 1719 377.5 2.1e-104


>>CCDS5377.1 FAM126A gene_id:84668|Hs108|chr7             (521 aa)
 initn: 3412 init1: 3412 opt: 3412  Z-score: 3946.1  bits: 739.8 E(32554): 1.8e-213
Smith-Waterman score: 3412; 100.0% identity (100.0% similar) in 521 aa overlap (1-521:1-521)

               10        20        30        40        50        60
pF1KE6 MFTSEKGVVEEWLSEFKTLPETSLPNYATNLKDKSSLVSSLYKVIQEPQSELLEPVCHQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MFTSEKGVVEEWLSEFKTLPETSLPNYATNLKDKSSLVSSLYKVIQEPQSELLEPVCHQL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 FEFYRSGEEQLLQFTLQFLPELIWCYLAVSASRNVHSSGCIEALLLGVYNLEIVDKQGHT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 FEFYRSGEEQLLQFTLQFLPELIWCYLAVSASRNVHSSGCIEALLLGVYNLEIVDKQGHT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 KVLSFTIPSLSKPSVYHEPSSIGSMALTESALSQHGLSKVVYSGPHPQREMLTAQNRFEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 KVLSFTIPSLSKPSVYHEPSSIGSMALTESALSQHGLSKVVYSGPHPQREMLTAQNRFEV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 LTFLLLCYNAALTYMPSVSLQSLCQICSRICVCGYPRQHVRKYKGISSRIPVSSGFMVQM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LTFLLLCYNAALTYMPSVSLQSLCQICSRICVCGYPRQHVRKYKGISSRIPVSSGFMVQM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 LTGIYFAFYNGEWDLAQKALDDIIYRAQLELYPEPLLVANAIKASLPHGPMKSNKEGTRC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LTGIYFAFYNGEWDLAQKALDDIIYRAQLELYPEPLLVANAIKASLPHGPMKSNKEGTRC
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 IQVEITPTSSRISRNAVTSMSIRGHRWKRHGNTELTGQEELMEISEVDEGFYSRAASSTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 IQVEITPTSSRISRNAVTSMSIRGHRWKRHGNTELTGQEELMEISEVDEGFYSRAASSTS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE6 QSGLSNSSHNCSNKPSIGKNHRRSGGSKTGGKEKETTGESCKDHFARKQTQRAQSENLEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 QSGLSNSSHNCSNKPSIGKNHRRSGGSKTGGKEKETTGESCKDHFARKQTQRAQSENLEL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE6 LSLKRLTLTTSQSLPKPSSHGLAKTAATVFSKSFEQVSGVTVPHNPSSAVGCGAGTDANR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LSLKRLTLTTSQSLPKPSSHGLAKTAATVFSKSFEQVSGVTVPHNPSSAVGCGAGTDANR
              430       440       450       460       470       480

              490       500       510       520 
pF1KE6 FSACSLQEEKLIYVSERTELPMKHQSGQQRPPSISITLSTD
       :::::::::::::::::::::::::::::::::::::::::
CCDS53 FSACSLQEEKLIYVSERTELPMKHQSGQQRPPSISITLSTD
              490       500       510       520 

>>CCDS2335.1 FAM126B gene_id:285172|Hs108|chr2            (530 aa)
 initn: 1617 init1: 1539 opt: 1719  Z-score: 1987.8  bits: 377.5 E(32554): 2.1e-104
Smith-Waterman score: 1719; 52.0% identity (77.8% similar) in 537 aa overlap (1-518:1-526)

               10        20        30        40        50        60
pF1KE6 MFTSEKGVVEEWLSEFKTLPETSLPNYATNLKDKSSLVSSLYKVIQEPQSELLEPVCHQL
       :. ... ::::::::::.::.:.. .::..:. :..:: .::::::. ..::::::::::
CCDS23 MLGTDRCVVEEWLSEFKALPDTQITSYAATLHRKKTLVPALYKVIQDSNNELLEPVCHQL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 FEFYRSGEEQLLQFTLQFLPELIWCYLAVSASRNVHSSGCIEALLLGVYNLEIVDKQGHT
       ::.:::.: .: .:::::::::.: :: ...::. .:.:::::::::.:::::.::.:..
CCDS23 FELYRSSEVRLKRFTLQFLPELMWVYLRLTVSRDRQSNGCIEALLLGIYNLEIADKDGNN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 KVLSFTIPSLSKPSVYHEPSSIGSMALTESALSQHGLSKVVYSGPHPQREMLTAQNRFEV
       ::::::::::::::.:::::.::::::::.:: :: : .::::  ::::: .::::::::
CCDS23 KVLSFTIPSLSKPSIYHEPSTIGSMALTEGALCQHDLIRVVYSDLHPQRETFTAQNRFEV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 LTFLLLCYNAALTYMPSVSLQSLCQICSRICVCGYPRQHVRKYKGISSRIPVSSGFMVQM
       :.::.::::.:..:::. : ::::.. ::.:: :.:::: ...: . .:: ..  ::::.
CCDS23 LSFLMLCYNSAIVYMPASSYQSLCRMGSRVCVSGFPRQHEKHWKELCGRIVLDPEFMVQL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 LTGIYFAFYNGEWDLAQKALDDIIYRAQLELYPEPLLVANAIKASLPHGPMKSNKEGTRC
       :::.:.:.:::.:::.:..::::::::::::. .:::::::.: :::     :..:: . 
CCDS23 LTGVYYAMYNGQWDLGQEVLDDIIYRAQLELFSQPLLVANAMKNSLPFDAPDSTQEGQKV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 IQVEITPTSSRISRNAVTSMSIRGHRWKRHGNTELTGQEELMEISEVDEGFYSRAASSTS
       ..::.:::  ::::.:.:. ::: :::.:.:   ..: :: ......:::: : :. :..
CCDS23 LKVEVTPTVPRISRTAITTASIRRHRWRREGAEGVNGGEESVNLNDADEGFSSGASLSSQ
              310       320       330       340       350       360

              370       380       390            400       410     
pF1KE6 QSGLSNSSHNCSNKPSIGKNHRRSGGSKTGGKEKET-----TGESCKDHFARKQTQRAQS
         : . ::   :.. :.     :. ..  ..:.:::     ..:: .:  .:::  .  .
CCDS23 PIGTKPSSS--SQRGSL-----RKVATGRSAKDKETASAIKSSESPRDSVVRKQYVQQPT
                370            380       390       400       410   

             420        430       440       450       460       470
pF1KE6 E----NLELLSLKR-LTLTTSQSLPKPSSHGLAKTAATVFSKSFEQVSGVTVPHNPSSAV
       .    ..::  .:. :.: ..: .:: .: .: .::..  ::::. :.:     . :...
CCDS23 DLSVDSVELTPMKKHLSLPAGQVVPKINSLSLIRTASASSSKSFDYVNG----SQASTSI
           420       430       440       450       460             

                     480       490       500         510       520 
pF1KE6 GCG-------AGTDANRFSACSLQEEKLIYVSERTEL--PMKHQSGQQRPPSISITLSTD
       : :       :...:::.:. ::::..:  ..:  ::  :    . :.: ::... :   
CCDS23 GVGTEGGTNLAANNANRYSTVSLQEDRLGQAGEGKELLSPGAPLTKQSRSPSFNMQLISQ
     470       480       490       500       510       520         

CCDS23 V
     530




521 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 13:22:30 2016 done: Tue Nov  8 13:22:30 2016
 Total Scan time:  2.000 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]