FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9688, 304 aa
  1>>>pF1KE9688 304 - 304 aa - 304 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4846+/-0.000803; mu= 15.2655+/- 0.048
 mean_var=74.6709+/-14.574, 0's: 0 Z-trim(108.4): 11  B-trim: 9 in 1/50
 Lambda= 0.148422
 statistics sampled from 10180 (10185) to 10180 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.704), E-opt: 0.2 (0.313), width:  16
 Scan time:  1.520

The best scores are:                                      opt bits E(32554)
CCDS10034.1 KATNBL1 gene_id:79768|Hs108|chr15      ( 304) 2034 444.6 4.5e-125


>>CCDS10034.1 KATNBL1 gene_id:79768|Hs108|chr15           (304 aa)
 initn: 2034 init1: 2034 opt: 2034  Z-score: 2358.9  bits: 444.6 E(32554): 4.5e-125
Smith-Waterman score: 2034; 100.0% identity (100.0% similar) in 304 aa overlap (1-304:1-304)

               10        20        30        40        50        60
pF1KE9 MASETHNVKKRNFCNKIEDHFIDLPRKKISNFTNKNMKEVKKSPKQLAAYINRTVGQTVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MASETHNVKKRNFCNKIEDHFIDLPRKKISNFTNKNMKEVKKSPKQLAAYINRTVGQTVK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 SPDKLRKVIYRRKKVHHPFPNPCYRKKQSPGSGGCDMANKENELACAGHLPEKLHHDSRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SPDKLRKVIYRRKKVHHPFPNPCYRKKQSPGSGGCDMANKENELACAGHLPEKLHHDSRT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 YLVNSSDSGSSQTESPSSKYSGFFSEVSQDHETMAQVLFSRNMRLNVALTFWRKRSISEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 YLVNSSDSGSSQTESPSSKYSGFFSEVSQDHETMAQVLFSRNMRLNVALTFWRKRSISEL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 VAYLLRIEDLGVVVDCLPVLTNCLQEEKQYISLGCCVDLLPLVKSLLKSKFEEYVIVGLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VAYLLRIEDLGVVVDCLPVLTNCLQEEKQYISLGCCVDLLPLVKSLLKSKFEEYVIVGLN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE9 WLQAVIKRWWSELSSKTEIINDGNIQILKQQLSGLWEQENHLTLVPGYTGNIAKDVDAYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 WLQAVIKRWWSELSSKTEIINDGNIQILKQQLSGLWEQENHLTLVPGYTGNIAKDVDAYL
              250       260       270       280       290       300

           
pF1KE9 LQLH
       ::::
CCDS10 LQLH
           




304 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:36:06 2016 done: Tue Nov  8 10:36:06 2016
 Total Scan time:  1.520 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]