FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9284, 327 aa
  1>>>pF1KE9284 327 - 327 aa - 327 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4919+/-0.000883; mu= 15.1484+/- 0.053
 mean_var=65.6610+/-13.667, 0's: 0 Z-trim(105.3): 19  B-trim: 421 in 1/51
 Lambda= 0.158278
 statistics sampled from 8341 (8351) to 8341 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.622), E-opt: 0.2 (0.257), width:  16
 Scan time:  2.080

The best scores are:                                      opt bits E(32554)
CCDS5682.1 COPS6 gene_id:10980|Hs108|chr7          ( 327) 2135 496.3 1.4e-140
CCDS10910.1 PSMD7 gene_id:5713|Hs108|chr16         ( 324)  366 92.4 5.4e-19
CCDS7785.1 EIF3F gene_id:8665|Hs108|chr11          ( 357)  354 89.6   4e-18


>>CCDS5682.1 COPS6 gene_id:10980|Hs108|chr7               (327 aa)
 initn: 2135 init1: 2135 opt: 2135  Z-score: 2637.5  bits: 496.3 E(32554): 1.4e-140
Smith-Waterman score: 2135; 100.0% identity (100.0% similar) in 327 aa overlap (1-327:1-327)

               10        20        30        40        50        60
pF1KE9 MAAAAAAAAATNGTGGSSGMEVDAAVVPSVMACGVTGSVSVALHPLVILNISDHWIRMRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MAAAAAAAAATNGTGGSSGMEVDAAVVPSVMACGVTGSVSVALHPLVILNISDHWIRMRS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 QEGRPVQVIGALIGKQEGRNIEVMNSFELLSHTVEEKIIIDKEYYYTKEEQFKQVFKELE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 QEGRPVQVIGALIGKQEGRNIEVMNSFELLSHTVEEKIIIDKEYYYTKEEQFKQVFKELE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 FLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVFESVIDIINGEAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 FLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVFESVIDIINGEAT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 MLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVKLILE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVKLILE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE9 YVKASEAGEVPFNHEILREAYALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 YVKASEAGEVPFNHEILREAYALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCN
              250       260       270       280       290       300

              310       320       
pF1KE9 TMNQFVNKFNVLYDRQGIGRRMRGLFF
       :::::::::::::::::::::::::::
CCDS56 TMNQFVNKFNVLYDRQGIGRRMRGLFF
              310       320       

>>CCDS10910.1 PSMD7 gene_id:5713|Hs108|chr16              (324 aa)
 initn: 299 init1: 182 opt: 366  Z-score: 454.4  bits: 92.4 E(32554): 5.4e-19
Smith-Waterman score: 366; 26.4% identity (63.7% similar) in 273 aa overlap (41-307:9-277)

               20        30        40        50        60        70
pF1KE9 TNGTGGSSGMEVDAAVVPSVMACGVTGSVSVALHPLVILNISDHWIRMRSQEGRPVQVIG
                                     :..::::.:.. ::. :. .. :   .:.:
CCDS10                       MPELAVQKVVVHPLVLLSVVDHFNRI-GKVGNQKRVVG
                                     10        20         30       

               80         90         100       110       120       
pF1KE9 ALIGKQEGRNIEVMNSFEL-LSHTVEEKII--IDKEYYYTKEEQFKQVFKELEFLGWYTT
       .:.:. . . ..: ::: . ...  ..  .  .:..:  .   .::.:  . ...::: :
CCDS10 VLLGSWQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHT
        40        50        60        70        80        90       

       130       140       150       160       170        180      
pF1KE9 GGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVFESVIDIIN-GEATM-LFAE
       :     .:: ... . .   . ... ..   :   ::. .. :: .. . :  :   : .
CCDS10 GPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVEEVHDDGTPTSKTFEH
       100       110       120       130       140       150       

         190       200        210       220       230       240    
pF1KE9 LTYTLATEEAERIGVDHVAR-MTATGSGENSTVAEHLIAQHSAIKMLHSRVKLILEYVKA
       .:  ...::::..::.:. : .  :  :   :.....  :  ..: :.:..  :  :.. 
CCDS10 VTSEIGAEEAEEVGVEHLLRDIKDTTVG---TLSQRITNQVHGLKGLNSKLLDIRSYLEK
       160       170       180          190       200       210    

          250       260       270       280       290       300    
pF1KE9 SEAGEVPFNHEILREAYALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQ
         .:..:.::.:. .   . . :: .: ..:   :: . ::  ...::... ..  ....
CCDS10 VATGKLPINHQIIYQLQDVFNLLPDVSLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHN
          220       230       240       250       260       270    

          310       320                                  
pF1KE9 FVNKFNVLYDRQGIGRRMRGLFF                           
       ..:                                               
CCDS10 LINNKIANRDAEKKEGQEKEESKKDRKEDKEKDKDKEKSDVKKEEKKEKK
          280       290       300       310       320    

>>CCDS7785.1 EIF3F gene_id:8665|Hs108|chr11               (357 aa)
 initn: 296 init1: 131 opt: 354  Z-score: 438.9  bits: 89.6 E(32554): 4e-18
Smith-Waterman score: 354; 25.7% identity (59.8% similar) in 311 aa overlap (2-307:50-356)

                                            10        20           
pF1KE9                              MAAAAAAAAATNGTGGSSGM--EVDAAVVPS
                                     ::::::.:: . : .:.    .. : ..:.
CCDS77 AAAPASVPAPTPAPAAAPVPAAAPASSSDPAAAAAATAAPGQTPASAQAPAQTPAPALPG
      20        30        40        50        60        70         

      30         40        50        60        70        80        
pF1KE9 VMACG-VTGSVSVALHPLVILNISDHWIRMRSQEGRPVQVIGALIGKQEGRNIEVMNSFE
           :   :.  : :::... .: : .   : .::  ..:::.:.:  . ...:: : : 
CCDS77 PALPGPFPGGRVVRLHPVILASIVDSY--ERRNEG-AARVIGTLLGTVDKHSVEVTNCFS
      80        90       100         110        120       130      

       90       100       110       120       130       140        
pF1KE9 LLSHTVEEKIIIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIES
       .  .  :... .: :.  .  :  :.:  .  .::::.::      .. .:.   .   .
CCDS77 VPHNESEDEVAVDMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPN
        140       150       160       170       180       190      

      150       160       170       180        190       200       
pF1KE9 PLFLKLNPMTKHTDLPVSVFESVIDIINGEAT-MLFAELTYTLATEEAERIGVDHVARMT
       :. : ..   ..  . .... :..  . :..  ..:. ::   :  ..:::::: . . :
CCDS77 PIHLTVDTSLQNGRMSIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMK-T
        200       210       220       230       240       250      

       210       220       230       240       250       260       
pF1KE9 ATGSGENSTVAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREAYALCHCL
         . ..   ..  :    .:   ... .. .:.:..   .:.:  .. . :  ..: . .
CCDS77 CFSPNRVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQV
         260       270       280       290       300       310     

       270       280       290       300        310       320      
pF1KE9 PVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQ-FVNKFNVLYDRQGIGRRMRGLF
       : .  : :.: . .. ::. ...::...:..  ..:. .::                   
CCDS77 PKIVPDDFETMLNSNINDLLMVTYLANLTQSQIALNEKLVNL                  
         320       330       340       350                         

        
pF1KE9 F




327 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:25:18 2016 done: Tue Nov  8 10:25:18 2016
 Total Scan time:  2.080 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]