FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3544, 412 aa 1>>>pF1KE3544 412 - 412 aa - 412 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 11.2065+/-0.000919; mu= -7.6374+/- 0.055 mean_var=354.3088+/-73.041, 0's: 0 Z-trim(117.1): 18 B-trim: 164 in 1/53 Lambda= 0.068137 statistics sampled from 17790 (17808) to 17790 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.822), E-opt: 0.2 (0.547), width: 16 Scan time: 2.470 The best scores are: opt bits E(32554) CCDS13980.1 CBX6 gene_id:23466|Hs108|chr22 ( 412) 2767 285.2 7.8e-77 CCDS77675.1 CBX6 gene_id:23466|Hs108|chr22 ( 394) 2128 222.4 6.1e-58 CCDS11765.1 CBX8 gene_id:57332|Hs108|chr17 ( 389) 613 73.4 4.1e-13 >>CCDS13980.1 CBX6 gene_id:23466|Hs108|chr22 (412 aa) initn: 2767 init1: 2767 opt: 2767 Z-score: 1492.9 bits: 285.2 E(32554): 7.8e-77 Smith-Waterman score: 2767; 100.0% identity (100.0% similar) in 412 aa overlap (1-412:1-412) 10 20 30 40 50 60 pF1KE3 MELSAVGERVFAAESIIKRRIRKGRIEYLVKWKGWAIKYSTWEPEENILDSRLIAAFEQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 MELSAVGERVFAAESIIKRRIRKGRIEYLVKWKGWAIKYSTWEPEENILDSRLIAAFEQK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 ERERELYGPKKRGPKPKTFLLKARAQAEALRISDVHFSVKPSASASSPKLHSSAAVHRLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 ERERELYGPKKRGPKPKTFLLKARAQAEALRISDVHFSVKPSASASSPKLHSSAAVHRLK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 KDIRRCHRMSRRPLPRPDPQGGSPGLRPPISPFSETVRIINRKVKPREPKRNRIILNLKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 KDIRRCHRMSRRPLPRPDPQGGSPGLRPPISPFSETVRIINRKVKPREPKRNRIILNLKV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 IDKGAGGGGAGQGAGALARPKVPSRNRVIGKSKKFSESVLRTQIRHMKFGAFALYKPPPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 IDKGAGGGGAGQGAGALARPKVPSRNRVIGKSKKFSESVLRTQIRHMKFGAFALYKPPPA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 PLVAPSPGKAEASAPGPGLLLAAPAAPYDARSSGSSGCPSPTPQSSDPDDTPPKLLPETV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 PLVAPSPGKAEASAPGPGLLLAAPAAPYDARSSGSSGCPSPTPQSSDPDDTPPKLLPETV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 SPSAPSWREPEVLDLSLPPESAATSKRAPPEVTAAAGPAPPTAPEPAGASSEPEAGDWRP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 SPSAPSWREPEVLDLSLPPESAATSKRAPPEVTAAAGPAPPTAPEPAGASSEPEAGDWRP 310 320 330 340 350 360 370 380 390 400 410 pF1KE3 EMSPCSNVVVTDVTSNLLTVTIKEFCNPEDFEKVAAGVAGAAGGGGSIGASK :::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 EMSPCSNVVVTDVTSNLLTVTIKEFCNPEDFEKVAAGVAGAAGGGGSIGASK 370 380 390 400 410 >>CCDS77675.1 CBX6 gene_id:23466|Hs108|chr22 (394 aa) initn: 2128 init1: 2128 opt: 2128 Z-score: 1153.7 bits: 222.4 E(32554): 6.1e-58 Smith-Waterman score: 2612; 95.6% identity (95.6% similar) in 412 aa overlap (1-412:1-394) 10 20 30 40 50 60 pF1KE3 MELSAVGERVFAAESIIKRRIRKGRIEYLVKWKGWAIKYSTWEPEENILDSRLIAAFEQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 MELSAVGERVFAAESIIKRRIRKGRIEYLVKWKGWAIKYSTWEPEENILDSRLIAAFEQK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 ERERELYGPKKRGPKPKTFLLKARAQAEALRISDVHFSVKPSASASSPKLHSSAAVHRLK :::::::::::::::::::::: :::::::::::::::::::: CCDS77 ERERELYGPKKRGPKPKTFLLK------------------PSASASSPKLHSSAAVHRLK 70 80 90 100 130 140 150 160 170 180 pF1KE3 KDIRRCHRMSRRPLPRPDPQGGSPGLRPPISPFSETVRIINRKVKPREPKRNRIILNLKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 KDIRRCHRMSRRPLPRPDPQGGSPGLRPPISPFSETVRIINRKVKPREPKRNRIILNLKV 110 120 130 140 150 160 190 200 210 220 230 240 pF1KE3 IDKGAGGGGAGQGAGALARPKVPSRNRVIGKSKKFSESVLRTQIRHMKFGAFALYKPPPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 IDKGAGGGGAGQGAGALARPKVPSRNRVIGKSKKFSESVLRTQIRHMKFGAFALYKPPPA 170 180 190 200 210 220 250 260 270 280 290 300 pF1KE3 PLVAPSPGKAEASAPGPGLLLAAPAAPYDARSSGSSGCPSPTPQSSDPDDTPPKLLPETV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 PLVAPSPGKAEASAPGPGLLLAAPAAPYDARSSGSSGCPSPTPQSSDPDDTPPKLLPETV 230 240 250 260 270 280 310 320 330 340 350 360 pF1KE3 SPSAPSWREPEVLDLSLPPESAATSKRAPPEVTAAAGPAPPTAPEPAGASSEPEAGDWRP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 SPSAPSWREPEVLDLSLPPESAATSKRAPPEVTAAAGPAPPTAPEPAGASSEPEAGDWRP 290 300 310 320 330 340 370 380 390 400 410 pF1KE3 EMSPCSNVVVTDVTSNLLTVTIKEFCNPEDFEKVAAGVAGAAGGGGSIGASK :::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 EMSPCSNVVVTDVTSNLLTVTIKEFCNPEDFEKVAAGVAGAAGGGGSIGASK 350 360 370 380 390 >>CCDS11765.1 CBX8 gene_id:57332|Hs108|chr17 (389 aa) initn: 653 init1: 517 opt: 613 Z-score: 348.9 bits: 73.4 E(32554): 4.1e-13 Smith-Waterman score: 625; 36.3% identity (54.9% similar) in 419 aa overlap (1-393:1-386) 10 20 30 40 50 60 pF1KE3 MELSAVGERVFAAESIIKRRIRKGRIEYLVKWKGWAIKYSTWEPEENILDSRLIAAFEQK ::::::::::::::...::::::::.:::::::::. :::::::::::::.::.::::.. CCDS11 MELSAVGERVFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFEER 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 ERERELYGPKKRGPKPKTFLLKARAQAEALRI---SDVHFSVKPSASASSPKLHSSAAVH ::: :::::::::::::::::::.:.:.: :: ... . ::. . :.. CCDS11 EREMELYGPKKRGPKPKTFLLKAQAKAKAKTYEFRSDSARGIRIPYPGRSPQ--DLASTS 70 80 90 100 110 120 130 140 150 160 170 pF1KE3 RLKKDIRRCHRMSRRPLPRPDPQGGSPGLRPPISPFSETVRIINRKVKPREPKRNRIILN : .. .: . :: :: : : .. : ::. :.: CCDS11 RAREGLR------------------NMGLSPPAS--STSTSSTCRAEAPRDRDRDR---- 120 130 140 150 180 190 200 210 220 230 pF1KE3 LKVIDKGAGGGGAGQGAGALARPKVPSRNRVIGKSKKFSESVLRTQIRHMKFGAFALYKP . .. . : . . .:: : .. ..: . . : : : CCDS11 DRDRERDRERERERERERERERERERGTSRVDDKPSSPGDSSKKRGPKPRK----ELPDP 160 170 180 190 200 210 240 250 260 270 280 pF1KE3 PPAPLVAPSPG--------KAEASAPGPGLLLAAPAAPYDARSSGSS--GCPSPTPQSSD :: :: : : . . : : . :. .. :: . :. : .:.:.. CCDS11 SQRPLGEPSAGLGEYLKGRKLDDTPSGAGKFPAGHSVIQLARRQDSDLVQCGVTSPSSAE 220 230 240 250 260 270 290 300 310 320 330 pF1KE3 P------DDTPPKLLPETVS---PSAPSWREPE---VLDLSLPPESAATSKRAPPEVTAA : : ... . .. .. . .:. : : :: :.. : .. : CCDS11 ATGKLAVDTFPARVIKHRAAFLEAKGQGALDPNGTRVRHGSGPPSSGGGLYR---DMGAQ 280 290 300 310 320 340 350 360 370 380 390 pF1KE3 AGPAPPTAPEP-AGASSEPEAGDWRPEMSPCSNVVVTDVTSNLLTVTIKEFCNPEDFEKV .: : : : ..:: .: : .. .:::::::::.::::::: . . : : CCDS11 GGRPSLIARIPVARILGDPEEESWSPSLTNLEKVVVTDVTSNFLTVTIKESNTDQGFFKE 330 340 350 360 370 380 400 410 pF1KE3 AAGVAGAAGGGGSIGASK CCDS11 KR 412 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 10:17:08 2016 done: Tue Nov 8 10:17:08 2016 Total Scan time: 2.470 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]