(Circular) (Six-base) MAPSORT of: pFN21AE6040.seq Check: 1936 from: 1 to: 5656 pFN21AE6040 5656 bp With 182 enzymes: SgfI * December 8, 2014 13:50 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 2576 2576 Size: 5656 AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3466 278 Size: 53 83 186 936 1930 2468 Fragments arranged by size: 2468 1930 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2598 2999 1937 Size: 661 401 4594 Fragments arranged by size: 4594 661 401 Acc65I G'GTAC_C Cuts at: 2977 2977 Size: 5656 AclI AA'CG_TT Cuts at: 1563 3783 4156 1563 Size: 2220 373 3063 Fragments arranged by size: 3063 2220 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2449 2890 3719 5103 5371 1632 Size: 817 441 829 1384 268 1917 Fragments arranged by size: 1917 1384 829 817 441 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5459 AflIII A'CryG_T Cuts at: 1203 4555 5532 1203 Size: 3352 977 1327 Fragments arranged by size: 3352 1327 977 AgeI A'CCGG_T Cuts at: 4487 4487 Size: 5656 AhdI GACnn_n'nnGTC Cuts at: 4385 4385 Size: 5656 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5656 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5656 AlwNI CAG_nnn'CTG Cuts at: 3399 4971 3399 Size: 1572 4084 ApaLI G'TGCA_C Cuts at: 3713 4869 3713 Size: 1156 4500 ApoI r'AATT_y Cuts at: 1493 2011 2965 3191 3343 5452 1493 Size: 518 954 226 152 2109 1697 Fragments arranged by size: 2109 1697 954 518 226 152 AseI AT'TA_AT Cuts at: 160 1032 4210 160 Size: 872 3178 1606 Fragments arranged by size: 3178 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5656 AvaI C'yCGr_G Cuts at: 1870 1943 2790 2981 1870 Size: 73 847 191 4545 Fragments arranged by size: 4545 847 191 73 AvrII C'CTAG_G Cuts at: 2939 2939 Size: 5656 BamHI G'GATC_C Cuts at: 2685 2986 3353 2685 Size: 301 367 4988 Fragments arranged by size: 4988 367 301 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2977 4432 618 Size: 325 217 627 1190 1455 1842 Fragments arranged by size: 1842 1455 1190 627 325 217 BanII G_rGCy'C Cuts at: 1391 2975 1391 Size: 1584 4072 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2134 2918 928 Size: 971 235 784 3666 Fragments arranged by size: 3666 971 784 235 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3847 3881 1903 Size: 34 1910 34 3678 Fragments arranged by size: 3678 1910 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3548 4758 3548 Size: 1210 4446 BclI T'GATC_A Cuts at: 1548 1548 Size: 5656 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4267 136 Size: 107 122 71 631 605 2595 1525 Fragments arranged by size: 2595 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5651 5651 Size: 5656 BlpI GC'TnA_GC Cuts at: 3073 3073 Size: 5656 Bme1580I G_kGCm'C Cuts at: 1790 3717 4873 1790 Size: 1927 1156 2573 Fragments arranged by size: 2573 1927 1156 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5656 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 3387 4345 442 Size: 416 53 83 399 24 1970 958 1753 Fragments arranged by size: 1970 1753 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5656 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2057 2231 4316 1239 Size: 818 174 2085 2579 Fragments arranged by size: 2579 2085 818 174 Bpu10I CC'TnA_GC Cuts at: 2323 2323 Size: 5656 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3781 4646 4944 3781 Size: 865 298 4493 Fragments arranged by size: 4493 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 4319 882 Size: 617 2820 2219 Fragments arranged by size: 2820 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 2287 3447 493 Size: 711 1083 1160 2702 Fragments arranged by size: 2702 1160 1083 711 BsaBI GATnn'nnATC Cuts at: 5650 5650 Size: 5656 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2704 3463 3845 4480 Size: 53 83 186 936 1171 759 382 635 Cuts at: 4480 275 Size: 1451 Fragments arranged by size: 1451 1171 936 759 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 4089 4487 4761 4908 5319 4089 Size: 398 274 147 411 4426 Fragments arranged by size: 4426 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2013 2043 2050 2080 2204 Size: 30 165 30 610 30 7 30 124 Cuts at: 2204 2234 2747 2777 1178 Size: 30 513 30 4057 Fragments arranged by size: 4057 610 513 165 124 30 30 30 30 30 30 7 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2048 2072 2752 1186 Size: 862 24 680 4090 Fragments arranged by size: 4090 862 680 24 BseYI C'CCAG_C Cuts at: 2863 4859 5355 2863 Size: 1996 496 3164 Fragments arranged by size: 3164 1996 496 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 5083 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 3106 3867 4895 1540 Size: 275 186 1105 761 1028 2301 Fragments arranged by size: 2301 1105 1028 761 275 186 BsiHKAI G_wGCw'C Cuts at: 2835 3717 3802 4873 2835 Size: 882 85 1071 3618 Fragments arranged by size: 3618 1071 882 85 BsmI GAATG_Cn' Cuts at: 2134 3167 3260 2134 Size: 1033 93 4530 Fragments arranged by size: 4530 1033 93 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2835 2975 3717 3802 4873 1391 Size: 399 1045 140 742 85 1071 2174 Fragments arranged by size: 2174 1071 1045 742 399 140 85 BspEI T'CCGG_A Cuts at: 5319 5319 Size: 5656 BspHI T'CATG_A Cuts at: 3545 5275 3545 Size: 1730 3926 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2576 3011 844 Size: 1732 435 3489 Fragments arranged by size: 3489 1732 435 BsrBI CCG'CTC Cuts at: 1394 1823 2732 3543 1394 Size: 429 909 811 3507 Fragments arranged by size: 3507 909 811 429 BsrDI GCAATG_nn' Cuts at: 65 1248 2667 4151 4325 65 Size: 1183 1419 1484 174 1396 Fragments arranged by size: 1484 1419 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4300 4487 1700 Size: 110 2490 187 2869 Fragments arranged by size: 2869 2490 187 110 BsrGI T'GTAC_A Cuts at: 96 2799 96 Size: 2703 2953 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5656 BssSI C'ACGA_G Cuts at: 3716 4728 3716 Size: 1012 4644 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5656 BstBI TT'CG_AA Cuts at: 4460 4460 Size: 5656 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5656 BstYI r'GATC_y Cuts at: 1972 2685 2986 3353 3738 3755 5207 5293 5305 Size: 713 301 367 385 17 1452 86 12 Cuts at: 5305 5651 1972 Size: 346 1977 Fragments arranged by size: 1977 1452 713 385 367 346 301 86 17 12 Bsu36I CC'TnA_GG Cuts at: 2681 2879 2681 Size: 198 5458 BtgI C'CryG_G Cuts at: 513 1065 513 Size: 552 5104 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 2156 487 Size: 683 56 930 3987 Fragments arranged by size: 3987 930 683 56 BtsI GCAGTG_nn' Cuts at: 2461 2658 2748 3172 3966 3986 2461 Size: 197 90 424 794 20 4131 Fragments arranged by size: 4131 794 424 197 90 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5656 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 2416 2451 529 Size: 35 1852 35 3734 Fragments arranged by size: 3734 1852 35 35 DraI TTT'AAA Cuts at: 2960 2960 Size: 5656 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4663 809 Size: 507 3347 1802 Fragments arranged by size: 3347 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2194 2376 2424 Size: 54 1425 50 275 18 364 182 48 Cuts at: 2424 3103 3992 5621 8 Size: 679 889 1629 43 Fragments arranged by size: 1629 1425 889 679 364 275 182 54 50 48 43 18 EagI C'GGCC_G Cuts at: 1537 1812 3103 1537 Size: 275 1291 4090 Fragments arranged by size: 4090 1291 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2777 3586 1353 Size: 1424 809 3423 Fragments arranged by size: 3423 1424 809 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4243 4617 4763 387 Size: 1064 138 2654 374 146 1280 Fragments arranged by size: 2654 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2057 2231 2449 2890 3719 4316 5103 Size: 393 425 174 218 441 829 597 787 Cuts at: 5103 5371 1239 Size: 268 1524 Fragments arranged by size: 1524 829 787 597 441 425 393 268 218 174 EcoNI CCTnn'n_nnAGG Cuts at: 2264 2264 Size: 5656 EcoRI G'AATT_C Cuts at: 2965 3343 2965 Size: 378 5278 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 2920 2920 Size: 5656 FspI TGC'GCA Cuts at: 4162 4162 Size: 5656 HaeII r_GCGC'y Cuts at: 1678 4803 1678 Size: 3125 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2013 2045 4297 4329 4371 Size: 32 135 32 441 32 2252 32 42 Cuts at: 4371 4403 1373 Size: 32 2626 Fragments arranged by size: 2626 2252 441 135 42 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 3000 3246 669 Size: 988 281 1062 246 3079 Fragments arranged by size: 3079 1062 988 281 246 HindIII A'AGCT_T Cuts at: 748 2480 748 Size: 1732 3924 HpaI GTT'AAC Cuts at: 3246 3246 Size: 5656 KpnI G_GTAC'C Cuts at: 2981 2981 Size: 5656 MfeI C'AATT_G Cuts at: 2498 3255 2498 Size: 757 4899 MluI A'CGCG_T Cuts at: 5532 5532 Size: 5656 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2103 4770 4954 1305 Size: 798 2667 184 2007 Fragments arranged by size: 2667 2007 798 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2196 2378 2426 10 Size: 54 1425 343 364 182 48 3240 Fragments arranged by size: 3240 1425 364 343 182 54 48 MslI CAynn'nnrTG Cuts at: 518 1166 3614 3973 4132 518 Size: 648 2448 359 159 2042 Fragments arranged by size: 2448 2042 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2077 3072 3749 4897 5142 1606 Size: 471 995 677 1148 245 2120 Fragments arranged by size: 2120 1148 995 677 471 245 NcoI C'CATG_G Cuts at: 513 1065 513 Size: 552 5104 NdeI CA'TA_TG Cuts at: 387 387 Size: 5656 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5656 NotI GC'GGCC_GC Cuts at: 3103 3103 Size: 5656 NspI r_CATG'y Cuts at: 1132 1229 3014 4559 1132 Size: 97 1785 1545 2229 Fragments arranged by size: 2229 1785 1545 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5656 PciI A'CATG_T Cuts at: 4555 4555 Size: 5656 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5656 PfoI T'CCnGG_A Cuts at: 2208 2208 Size: 5656 PmeI GTTT'AAAC Cuts at: 2960 2960 Size: 5656 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3725 3757 5238 5270 3725 Size: 32 1481 32 4111 Fragments arranged by size: 4111 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5656 PsiI TTA'TAA Cuts at: 3226 3226 Size: 5656 PstI C_TGCA'G Cuts at: 830 3008 830 Size: 2178 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5656 PvuII CAG'CTG Cuts at: 2077 2077 Size: 5656 SalI G'TCGA_C Cuts at: 1936 2998 1936 Size: 1062 4594 SbfI CC_TGCA'GG Cuts at: 3008 3008 Size: 5656 ScaI AGT'ACT Cuts at: 3904 5616 3904 Size: 1712 3944 SfcI C'TryA_G Cuts at: 826 1045 3004 4139 4820 5011 826 Size: 219 1959 1135 681 191 1471 Fragments arranged by size: 1959 1471 1135 681 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5656 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5656 SmaI CCC'GGG Cuts at: 1872 2792 2983 1872 Size: 920 191 4545 Fragments arranged by size: 4545 920 191 SmlI C'TyrA_G Cuts at: 820 1017 1943 3760 4661 4923 820 Size: 197 926 1817 901 262 1553 Fragments arranged by size: 1817 1553 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 2287 3447 493 Size: 1794 1160 2702 Fragments arranged by size: 2702 1794 1160 SpeI A'CTAG_T Cuts at: 152 152 Size: 5656 SphI G_CATG'C Cuts at: 1132 3014 1132 Size: 1882 3774 SspI AAT'ATT Cuts at: 5 52 3580 5 Size: 47 3528 2081 Fragments arranged by size: 3528 2081 47 StuI AGG'CCT Cuts at: 1517 2903 1517 Size: 1386 4270 StyI C'CwwG_G Cuts at: 513 1065 2191 2939 3095 513 Size: 552 1126 748 156 3074 Fragments arranged by size: 3074 1126 748 552 156 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3683 3700 3853 4038 4483 325 Size: 1255 2103 17 153 185 445 1498 Fragments arranged by size: 2103 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2181 2307 2330 Size: 274 80 33 51 1443 204 126 23 Cuts at: 2330 2799 3902 5614 96 Size: 469 1103 1712 138 Fragments arranged by size: 1712 1443 1103 469 274 204 138 126 80 51 33 23 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5616 5648 5616 Size: 32 5624 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5656 XbaI T'CTAG_A Cuts at: 2992 2992 Size: 5656 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5656 XmaI C'CCGG_G Cuts at: 1870 2790 2981 1870 Size: 920 191 4545 Fragments arranged by size: 4545 920 191 XmnI GAAnn'nnTTC Cuts at: 3785 3785 Size: 5656 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3464 276 Size: 53 83 186 936 1930 2468 Fragments arranged by size: 2468 1930 936 186 83 53 Enzymes that do cut: AarI AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI AvrII BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI Bsu36I BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoNI EcoRI FalI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PfoI PmeI PpiI PshAI PsiI PstI PvuI PvuII SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AfeI AloI ApaI AscI BaeI BbeI BbvCI BfrBI BplI BsiWI BsmBI BstXI BstZ17I DraIII EcoICRI EcoO109I EcoRV FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PmlI PpuMI PspOMI PspXI PsrI RsrII SacI SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI XcmI