FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5194, 154 aa 1>>>pF1KE5194 154 - 154 aa - 154 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1202+/-0.000312; mu= 12.3540+/- 0.019 mean_var=55.8706+/-11.041, 0's: 0 Z-trim(114.9): 13 B-trim: 75 in 1/52 Lambda= 0.171586 statistics sampled from 25074 (25083) to 25074 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.693), E-opt: 0.2 (0.294), width: 16 Scan time: 4.850 The best scores are: opt bits E(85289) NP_001961 (OMIM: 600187) eukaryotic translation in ( 154) 992 253.3 1.2e-67 NP_001137233 (OMIM: 600187) eukaryotic translation ( 154) 992 253.3 1.2e-67 NP_001137234 (OMIM: 600187) eukaryotic translation ( 154) 992 253.3 1.2e-67 XP_005256566 (OMIM: 600187) PREDICTED: eukaryotic ( 154) 992 253.3 1.2e-67 NP_001137232 (OMIM: 600187) eukaryotic translation ( 184) 992 253.3 1.4e-67 NP_065123 (OMIM: 605782) eukaryotic translation in ( 153) 840 215.6 2.5e-56 >>NP_001961 (OMIM: 600187) eukaryotic translation initia (154 aa) initn: 992 init1: 992 opt: 992 Z-score: 1335.7 bits: 253.3 E(85289): 1.2e-67 Smith-Waterman score: 992; 98.1% identity (98.7% similar) in 154 aa overlap (1-154:1-154) 10 20 30 40 50 60 pF1KE5 MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGWPCKIVEMSASKTGKHGHAKVHLVG ::::::::::::::::::::::::::::::::::: ::::::::.::::::::::::::: NP_001 MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVPEDLRLPEGDLG :::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::: NP_001 IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVREDLRLPEGDLG 70 80 90 100 110 120 130 140 150 pF1KE5 KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK :::::::::::::::::::::::::::::::::: NP_001 KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK 130 140 150 >>NP_001137233 (OMIM: 600187) eukaryotic translation ini (154 aa) initn: 992 init1: 992 opt: 992 Z-score: 1335.7 bits: 253.3 E(85289): 1.2e-67 Smith-Waterman score: 992; 98.1% identity (98.7% similar) in 154 aa overlap (1-154:1-154) 10 20 30 40 50 60 pF1KE5 MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGWPCKIVEMSASKTGKHGHAKVHLVG ::::::::::::::::::::::::::::::::::: ::::::::.::::::::::::::: NP_001 MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVPEDLRLPEGDLG :::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::: NP_001 IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVREDLRLPEGDLG 70 80 90 100 110 120 130 140 150 pF1KE5 KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK :::::::::::::::::::::::::::::::::: NP_001 KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK 130 140 150 >>NP_001137234 (OMIM: 600187) eukaryotic translation ini (154 aa) initn: 992 init1: 992 opt: 992 Z-score: 1335.7 bits: 253.3 E(85289): 1.2e-67 Smith-Waterman score: 992; 98.1% identity (98.7% similar) in 154 aa overlap (1-154:1-154) 10 20 30 40 50 60 pF1KE5 MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGWPCKIVEMSASKTGKHGHAKVHLVG ::::::::::::::::::::::::::::::::::: ::::::::.::::::::::::::: NP_001 MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVPEDLRLPEGDLG :::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::: NP_001 IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVREDLRLPEGDLG 70 80 90 100 110 120 130 140 150 pF1KE5 KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK :::::::::::::::::::::::::::::::::: NP_001 KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK 130 140 150 >>XP_005256566 (OMIM: 600187) PREDICTED: eukaryotic tran (154 aa) initn: 992 init1: 992 opt: 992 Z-score: 1335.7 bits: 253.3 E(85289): 1.2e-67 Smith-Waterman score: 992; 98.1% identity (98.7% similar) in 154 aa overlap (1-154:1-154) 10 20 30 40 50 60 pF1KE5 MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGWPCKIVEMSASKTGKHGHAKVHLVG ::::::::::::::::::::::::::::::::::: ::::::::.::::::::::::::: XP_005 MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVPEDLRLPEGDLG :::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::: XP_005 IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVREDLRLPEGDLG 70 80 90 100 110 120 130 140 150 pF1KE5 KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK :::::::::::::::::::::::::::::::::: XP_005 KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK 130 140 150 >>NP_001137232 (OMIM: 600187) eukaryotic translation ini (184 aa) initn: 992 init1: 992 opt: 992 Z-score: 1334.4 bits: 253.3 E(85289): 1.4e-67 Smith-Waterman score: 992; 98.1% identity (98.7% similar) in 154 aa overlap (1-154:31-184) 10 20 30 pF1KE5 MADDLDFETGDAGASATFPMQCSALRKNGF :::::::::::::::::::::::::::::: NP_001 MCGTGGTDSKTRRPPHRASFLKRLESKPLKMADDLDFETGDAGASATFPMQCSALRKNGF 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE5 VVLKGWPCKIVEMSASKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQ ::::: ::::::::.::::::::::::::::::::::::::::::::::::::::::::: NP_001 VVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQ 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE5 LIGIQDGYLSLLQDSGEVPEDLRLPEGDLGKEIEQKYDCGEEILITVLSAMTEEAAVAIK :::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::: NP_001 LIGIQDGYLSLLQDSGEVREDLRLPEGDLGKEIEQKYDCGEEILITVLSAMTEEAAVAIK 130 140 150 160 170 180 pF1KE5 AMAK :::: NP_001 AMAK >>NP_065123 (OMIM: 605782) eukaryotic translation initia (153 aa) initn: 840 init1: 840 opt: 840 Z-score: 1132.4 bits: 215.6 E(85289): 2.5e-56 Smith-Waterman score: 840; 82.0% identity (93.3% similar) in 150 aa overlap (1-150:1-150) 10 20 30 40 50 60 pF1KE5 MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGWPCKIVEMSASKTGKHGHAKVHLVG :::..:: :::::::.:.::::::::::::::::: ::::::::.::::::::::::::: NP_065 MADEIDFTTGDAGASSTYPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVPEDLRLPEGDLG ::::::::::::::::::::::::::::.::: ::::::::: ..::: :::.::::.:: NP_065 IDIFTGKKYEDICPSTHNMDVPNIKRNDYQLICIQDGYLSLLTETGEVREDLKLPEGELG 70 80 90 100 110 120 130 140 150 pF1KE5 KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK :::: ::. ::.. ..:. ::.:: ::::: NP_065 KEIEGKYNAGEDVQVSVMCAMSEEYAVAIKPCK 130 140 150 154 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 07:21:45 2016 done: Tue Nov 8 07:21:45 2016 Total Scan time: 4.850 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]