FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5789, 616 aa 1>>>pF1KE5789 616 - 616 aa - 616 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 10.8738+/-0.00117; mu= -1.4230+/- 0.071 mean_var=533.5060+/-113.150, 0's: 0 Z-trim(115.0): 67 B-trim: 774 in 1/53 Lambda= 0.055527 statistics sampled from 15553 (15598) to 15553 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.768), E-opt: 0.2 (0.479), width: 16 Scan time: 3.840 The best scores are: opt bits E(32554) CCDS7245.1 CSTF2T gene_id:23283|Hs108|chr10 ( 616) 4237 354.4 2.6e-97 CCDS14473.1 CSTF2 gene_id:1478|Hs108|chrX ( 577) 2535 218.0 2.8e-56 CCDS78498.1 CSTF2 gene_id:1478|Hs108|chrX ( 597) 1888 166.2 1.1e-40 >>CCDS7245.1 CSTF2T gene_id:23283|Hs108|chr10 (616 aa) initn: 4237 init1: 4237 opt: 4237 Z-score: 1860.5 bits: 354.4 E(32554): 2.6e-97 Smith-Waterman score: 4237; 100.0% identity (100.0% similar) in 616 aa overlap (1-616:1-616) 10 20 30 40 50 60 pF1KE5 MSSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 MSSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 FCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGPAAPIIDSPYGDPID :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 FCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGPAAPIIDSPYGDPID 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 PEDAPESITRAVASLPPEQMFELMKQMKLCVQNSHQEARNMLLQNPQLAYALLQAQVVMR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 PEDAPESITRAVASLPPEQMFELMKQMKLCVQNSHQEARNMLLQNPQLAYALLQAQVVMR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 IMDPEIALKILHRKIHVTPLIPGKSQSVSVSGPGPGPGPGLCPGPNVLLNQQNPPAPQPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 IMDPEIALKILHRKIHVTPLIPGKSQSVSVSGPGPGPGPGLCPGPNVLLNQQNPPAPQPQ 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 HLARRPVKDIPPLMQTPIQGGIPAPGPIPAAVPGAGPGSLTPGGAMQPQLGMPGVGPVPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 HLARRPVKDIPPLMQTPIQGGIPAPGPIPAAVPGAGPGSLTPGGAMQPQLGMPGVGPVPL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 ERGQVQMSDPRAPIPRGPVTPGGLPPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPPHQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 ERGQVQMSDPRAPIPRGPVTPGGLPPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPPHQ 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE5 GPPMHHASGHDTRGPSSHEMRGGPLGDPRLLIGEPRGPMIDQRGLPMDGRGGRDSRAMET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 GPPMHHASGHDTRGPSSHEMRGGPLGDPRLLIGEPRGPMIDQRGLPMDGRGGRDSRAMET 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE5 RAMETEVLETRVMERRGMETCAMETRGMEARGMDARGLEMRGPVPSSRGPMTGGIQGPGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 RAMETEVLETRVMERRGMETCAMETRGMEARGMDARGLEMRGPVPSSRGPMTGGIQGPGP 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE5 INIGAGGPPQGPRQVPGISGVGNPGAGMQGTGIQGTGMQGAGIQGGGMQGAGIQGVSIQG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 INIGAGGPPQGPRQVPGISGVGNPGAGMQGTGIQGTGMQGAGIQGGGMQGAGIQGVSIQG 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE5 GGIQGGGIQGASKQGGSQPSSFSPGQSQVTPQDQEKAALIMQVLQLTADQIAMLPPEQRQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 GGIQGGGIQGASKQGGSQPSSFSPGQSQVTPQDQEKAALIMQVLQLTADQIAMLPPEQRQ 550 560 570 580 590 600 610 pF1KE5 SILILKEQIQKSTGAS :::::::::::::::: CCDS72 SILILKEQIQKSTGAS 610 >>CCDS14473.1 CSTF2 gene_id:1478|Hs108|chrX (577 aa) initn: 1812 init1: 1221 opt: 2535 Z-score: 1123.9 bits: 218.0 E(32554): 2.8e-56 Smith-Waterman score: 2813; 69.7% identity (81.0% similar) in 631 aa overlap (1-615:1-576) 10 20 30 40 50 60 pF1KE5 MSSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYG :..:.:::::.::::::::::::::::::::::::::::: ::::::::::::::::::: CCDS14 MAGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 FCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGPAAPIIDSPYGDPID ::::::::::::::::::::::::::::::::::::::::::::: .::.:.::::. :. CCDS14 FCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIESPYGETIS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 PEDAPESITRAVASLPPEQMFELMKQMKLCVQNSHQEARNMLLQNPQLAYALLQAQVVMR ::::::::..:::::::::::::::::::::::: ::::::::::::::::::::::::: CCDS14 PEDAPESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 IMDPEIALKILHRKIHVTPLIPGKSQSVSVSGPGPGPGPGLCPGPNVLLNQQNPPAPQPQ :.:::::::::::. .. :: :. : : : ::: : :: .::::: ::: : CCDS14 IVDPEIALKILHRQTNIPTLIAGNPQ------PVHGAGPG--SGSNVSMNQQNPQAPQAQ 190 200 210 220 230 250 260 270 280 290 300 pF1KE5 HLARRPVKDIPPLMQTPIQGGIPAPGPIPAAVPGAGPGSLTPGGAMQPQLGMPGVGPVPL :. :. :::::. .:::.:::: .:::: : :::::.:::.:: :.:::: ::: . CCDS14 SLGGMHVNGAPPLMQASMQGGVPAPGQMPAAVTGPGPGSLAPGGGMQAQVGMPGSGPVSM 240 250 260 270 280 290 310 320 330 340 350 pF1KE5 ERGQVQMSDPRAPIPRGPVTPGGLP-PRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPPH ::::: :.:::: . :: . :...: :::::::::::::::::::::::::::::::::: CCDS14 ERGQVPMQDPRAAMQRGSL-PANVPTPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPPH 300 310 320 330 340 350 360 370 380 390 400 410 pF1KE5 QGPPMHHASGHDTRGPSSHEMRGGPLGDPRLLIGEPRGPMIDQRGLPMDGRGGRD----- :::::::. ::..::: ::.::::: .:: :..::::::.:::: :.::::::: CCDS14 QGPPMHHVPGHESRGPPPHELRGGPLPEPRPLMAEPRGPMLDQRGPPLDGRGGRDPRGID 360 370 380 390 400 410 420 430 440 450 460 pF1KE5 SRAMETRAMETE----------VLETRVMERRGMETCAMETRGMEARGMDARGLEMRGPV .:.::.::::.. ..:.:.:: :.::. :::.:.::.:::.:::.. :::: CCDS14 ARGMEARAMEARGLDARGLEARAMEARAMEARAMEARAMEARAMEVRGMEARGMDTRGPV 420 430 440 450 460 470 470 480 490 500 510 520 pF1KE5 PSSRGPMTGGIQGPGPINIGAGGPPQGPRQVPGISGVGNPGAGMQGTGIQGTGMQGAGIQ :. :::. .:.:::.:::.:: ::: :::: . ::::::::.:: CCDS14 PGPRGPIPSGMQGPSPINMGAV-VPQGSRQVPVM---------------QGTGMQGASIQ 480 490 500 510 530 540 550 560 570 580 pF1KE5 GGGMQGAGIQGVSIQGGGIQGGGIQGASKQGGSQPSSFSPGQSQVTPQDQEKAALIMQVL :: :::..:::::.::::::.:::::::::: CCDS14 GG------------------------------SQPGGFSPGQNQVTPQDHEKAALIMQVL 520 530 540 590 600 610 pF1KE5 QLTADQIAMLPPEQRQSILILKEQIQKSTGAS ::::::::::::::::::::::::::::::: CCDS14 QLTADQIAMLPPEQRQSILILKEQIQKSTGAP 550 560 570 >>CCDS78498.1 CSTF2 gene_id:1478|Hs108|chrX (597 aa) initn: 2453 init1: 1221 opt: 1888 Z-score: 843.7 bits: 166.2 E(32554): 1.1e-40 Smith-Waterman score: 2763; 67.6% identity (78.5% similar) in 651 aa overlap (1-615:1-596) 10 20 30 40 50 60 pF1KE5 MSSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYG :..:.:::::.::::::::::::::::::::::::::::: ::::::::::::::::::: CCDS78 MAGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 FCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGPAAPIIDSPYGDPID ::::::::::::::::::::::::::::::::::::::::::::: .::.:.::::. :. CCDS78 FCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIESPYGETIS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 PEDAPESITRAVASLPPEQMFELMKQMKLCVQNSHQEARNMLLQNPQLAYALLQAQVVMR ::::::::..:::::::::::::::::::::::: ::::::::::::::::::::::::: CCDS78 PEDAPESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 IMDPEIALKILHRKIHVTPLIPGKSQSVSVSGPGPGPGPGLCPGPNVLLNQQNPPAPQPQ :.:::::::::::. .. :: :. : : : ::: : :: .::::: ::: : CCDS78 IVDPEIALKILHRQTNIPTLIAGNPQ------PVHGAGPG--SGSNVSMNQQNPQAPQAQ 190 200 210 220 230 250 260 270 280 290 300 pF1KE5 HLARRPVKDIPPLMQTPIQGGIPAPGPIPAAVPGAGPGSLTPGGAMQPQLGMPGVGPVPL :. :. :::::. .:::.:::: .:::: : :::::.:::.:: :.:::: ::: . CCDS78 SLGGMHVNGAPPLMQASMQGGVPAPGQMPAAVTGPGPGSLAPGGGMQAQVGMPGSGPVSM 240 250 260 270 280 290 310 320 330 pF1KE5 ERGQ--------------------VQMSDPRAPIPRGPVTPGGLP-PRGLLGDAPNDPRG :::: : :.:::: . :: . :...: :::::::::::::: CCDS78 ERGQGTLQHSPVGPAGPASIERVQVPMQDPRAAMQRGSL-PANVPTPRGLLGDAPNDPRG 300 310 320 330 340 350 340 350 360 370 380 390 pF1KE5 GTLLSVTGEVEPRGYLGPPHQGPPMHHASGHDTRGPSSHEMRGGPLGDPRLLIGEPRGPM :::::::::::::::::::::::::::. ::..::: ::.::::: .:: :..:::::: CCDS78 GTLLSVTGEVEPRGYLGPPHQGPPMHHVPGHESRGPPPHELRGGPLPEPRPLMAEPRGPM 360 370 380 390 400 410 400 410 420 430 440 pF1KE5 IDQRGLPMDGRGGRD-----SRAMETRAMETE----------VLETRVMERRGMETCAME .:::: :.::::::: .:.::.::::.. ..:.:.:: :.::. ::: CCDS78 LDQRGPPLDGRGGRDPRGIDARGMEARAMEARGLDARGLEARAMEARAMEARAMEARAME 420 430 440 450 460 470 450 460 470 480 490 500 pF1KE5 TRGMEARGMDARGLEMRGPVPSSRGPMTGGIQGPGPINIGAGGPPQGPRQVPGISGVGNP .:.::.:::.:::.. :::::. :::. .:.:::.:::.:: ::: :::: . CCDS78 ARAMEVRGMEARGMDTRGPVPGPRGPIPSGMQGPSPINMGAV-VPQGSRQVPVM------ 480 490 500 510 520 510 520 530 540 550 560 pF1KE5 GAGMQGTGIQGTGMQGAGIQGGGMQGAGIQGVSIQGGGIQGGGIQGASKQGGSQPSSFSP ::::::::.:::: :::..::: CCDS78 ---------QGTGMQGASIQGG------------------------------SQPGGFSP 530 540 570 580 590 600 610 pF1KE5 GQSQVTPQDQEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKSTGAS ::.::::::.::::::::::::::::::::::::::::::::::::::::: CCDS78 GQNQVTPQDHEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKSTGAP 550 560 570 580 590 616 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 06:40:16 2016 done: Tue Nov 8 06:40:17 2016 Total Scan time: 3.840 Total Display time: 0.030 Function used was FASTA [36.3.4 Apr, 2011]