FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5766, 589 aa 1>>>pF1KE5766 589 - 589 aa - 589 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2416+/-0.000516; mu= 19.5548+/- 0.032 mean_var=67.7702+/-13.472, 0's: 0 Z-trim(107.2): 32 B-trim: 0 in 0/51 Lambda= 0.155796 statistics sampled from 15207 (15225) to 15207 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.533), E-opt: 0.2 (0.179), width: 16 Scan time: 8.140 The best scores are: opt bits E(85289) NP_005678 (OMIM: 609690) phenylalanine--tRNA ligas ( 589) 3843 873.6 0 XP_016858599 (OMIM: 609690) PREDICTED: phenylalani ( 490) 3208 730.8 2.5e-210 XP_006712232 (OMIM: 609690) PREDICTED: phenylalani ( 490) 3208 730.8 2.5e-210 XP_011508768 (OMIM: 609690) PREDICTED: phenylalani ( 490) 3208 730.8 2.5e-210 >>NP_005678 (OMIM: 609690) phenylalanine--tRNA ligase be (589 aa) initn: 3843 init1: 3843 opt: 3843 Z-score: 4667.3 bits: 873.6 E(85289): 0 Smith-Waterman score: 3843; 100.0% identity (100.0% similar) in 589 aa overlap (1-589:1-589) 10 20 30 40 50 60 pF1KE5 MPTVSVKRDLLFQALGRTYTDEEFDELCFEFGLELDEITSEKEIISKEQGNVKAAGASDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 MPTVSVKRDLLFQALGRTYTDEEFDELCFEFGLELDEITSEKEIISKEQGNVKAAGASDV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 VLYKIDVPANRYDLLCLEGLVRGLQVFKERIKAPVYKRVMPDGKIQKLIITEETAKIRPF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 VLYKIDVPANRYDLLCLEGLVRGLQVFKERIKAPVYKRVMPDGKIQKLIITEETAKIRPF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 AVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPSD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 AVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPSD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 IKFKPLNKTKEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPIINGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 IKFKPLNKTKEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPIINGD 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 HSRITVNTRNIFIECTGTDFTKAKIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKSHTFP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 HSRITVNTRNIFIECTGTDFTKAKIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKSHTFP 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 ELAYRKEMVRADLINKKVGIRETPENLAKLLTRMYLKSEVIGDGNQIEIEIPPTRADIIH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 ELAYRKEMVRADLINKKVGIRETPENLAKLLTRMYLKSEVIGDGNQIEIEIPPTRADIIH 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE5 ACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPLNKLTELLRHDMAAAGFTEALTFALCSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 ACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPLNKLTELLRHDMAAAGFTEALTFALCSQ 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE5 EDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLFEISDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 EDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLFEISDI 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE5 VIKDSNTDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLLDVPPGEDKGGYVIKASEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 VIKDSNTDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLLDVPPGEDKGGYVIKASEG 490 500 510 520 530 540 550 560 570 580 pF1KE5 PAFFPGRCAEIFARGQSVGKLGVLHPDVITKFELTMPCSSLEINVGPFL ::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 PAFFPGRCAEIFARGQSVGKLGVLHPDVITKFELTMPCSSLEINVGPFL 550 560 570 580 >>XP_016858599 (OMIM: 609690) PREDICTED: phenylalanine-- (490 aa) initn: 3208 init1: 3208 opt: 3208 Z-score: 3897.1 bits: 730.8 E(85289): 2.5e-210 Smith-Waterman score: 3208; 100.0% identity (100.0% similar) in 490 aa overlap (100-589:1-490) 70 80 90 100 110 120 pF1KE5 NRYDLLCLEGLVRGLQVFKERIKAPVYKRVMPDGKIQKLIITEETAKIRPFAVAAVLRNI :::::::::::::::::::::::::::::: XP_016 MPDGKIQKLIITEETAKIRPFAVAAVLRNI 10 20 30 130 140 150 160 170 180 pF1KE5 KFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPSDIKFKPLNKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPSDIKFKPLNKT 40 50 60 70 80 90 190 200 210 220 230 240 pF1KE5 KEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPIINGDHSRITVNTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPIINGDHSRITVNTR 100 110 120 130 140 150 250 260 270 280 290 300 pF1KE5 NIFIECTGTDFTKAKIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKSHTFPELAYRKEMV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 NIFIECTGTDFTKAKIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKSHTFPELAYRKEMV 160 170 180 190 200 210 310 320 330 340 350 360 pF1KE5 RADLINKKVGIRETPENLAKLLTRMYLKSEVIGDGNQIEIEIPPTRADIIHACDIVEDAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 RADLINKKVGIRETPENLAKLLTRMYLKSEVIGDGNQIEIEIPPTRADIIHACDIVEDAA 220 230 240 250 260 270 370 380 390 400 410 420 pF1KE5 IAYGYNNIQMTLPKTYTIANQFPLNKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 IAYGYNNIQMTLPKTYTIANQFPLNKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGV 280 290 300 310 320 330 430 440 450 460 470 480 pF1KE5 DISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLFEISDIVIKDSNTDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 DISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLFEISDIVIKDSNTDV 340 350 360 370 380 390 490 500 510 520 530 540 pF1KE5 GAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLLDVPPGEDKGGYVIKASEGPAFFPGRCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLLDVPPGEDKGGYVIKASEGPAFFPGRCA 400 410 420 430 440 450 550 560 570 580 pF1KE5 EIFARGQSVGKLGVLHPDVITKFELTMPCSSLEINVGPFL :::::::::::::::::::::::::::::::::::::::: XP_016 EIFARGQSVGKLGVLHPDVITKFELTMPCSSLEINVGPFL 460 470 480 490 >>XP_006712232 (OMIM: 609690) PREDICTED: phenylalanine-- (490 aa) initn: 3208 init1: 3208 opt: 3208 Z-score: 3897.1 bits: 730.8 E(85289): 2.5e-210 Smith-Waterman score: 3208; 100.0% identity (100.0% similar) in 490 aa overlap (100-589:1-490) 70 80 90 100 110 120 pF1KE5 NRYDLLCLEGLVRGLQVFKERIKAPVYKRVMPDGKIQKLIITEETAKIRPFAVAAVLRNI :::::::::::::::::::::::::::::: XP_006 MPDGKIQKLIITEETAKIRPFAVAAVLRNI 10 20 30 130 140 150 160 170 180 pF1KE5 KFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPSDIKFKPLNKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 KFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPSDIKFKPLNKT 40 50 60 70 80 90 190 200 210 220 230 240 pF1KE5 KEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPIINGDHSRITVNTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 KEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPIINGDHSRITVNTR 100 110 120 130 140 150 250 260 270 280 290 300 pF1KE5 NIFIECTGTDFTKAKIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKSHTFPELAYRKEMV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 NIFIECTGTDFTKAKIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKSHTFPELAYRKEMV 160 170 180 190 200 210 310 320 330 340 350 360 pF1KE5 RADLINKKVGIRETPENLAKLLTRMYLKSEVIGDGNQIEIEIPPTRADIIHACDIVEDAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 RADLINKKVGIRETPENLAKLLTRMYLKSEVIGDGNQIEIEIPPTRADIIHACDIVEDAA 220 230 240 250 260 270 370 380 390 400 410 420 pF1KE5 IAYGYNNIQMTLPKTYTIANQFPLNKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 IAYGYNNIQMTLPKTYTIANQFPLNKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGV 280 290 300 310 320 330 430 440 450 460 470 480 pF1KE5 DISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLFEISDIVIKDSNTDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 DISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLFEISDIVIKDSNTDV 340 350 360 370 380 390 490 500 510 520 530 540 pF1KE5 GAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLLDVPPGEDKGGYVIKASEGPAFFPGRCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 GAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLLDVPPGEDKGGYVIKASEGPAFFPGRCA 400 410 420 430 440 450 550 560 570 580 pF1KE5 EIFARGQSVGKLGVLHPDVITKFELTMPCSSLEINVGPFL :::::::::::::::::::::::::::::::::::::::: XP_006 EIFARGQSVGKLGVLHPDVITKFELTMPCSSLEINVGPFL 460 470 480 490 >>XP_011508768 (OMIM: 609690) PREDICTED: phenylalanine-- (490 aa) initn: 3208 init1: 3208 opt: 3208 Z-score: 3897.1 bits: 730.8 E(85289): 2.5e-210 Smith-Waterman score: 3208; 100.0% identity (100.0% similar) in 490 aa overlap (100-589:1-490) 70 80 90 100 110 120 pF1KE5 NRYDLLCLEGLVRGLQVFKERIKAPVYKRVMPDGKIQKLIITEETAKIRPFAVAAVLRNI :::::::::::::::::::::::::::::: XP_011 MPDGKIQKLIITEETAKIRPFAVAAVLRNI 10 20 30 130 140 150 160 170 180 pF1KE5 KFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPSDIKFKPLNKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 KFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPSDIKFKPLNKT 40 50 60 70 80 90 190 200 210 220 230 240 pF1KE5 KEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPIINGDHSRITVNTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 KEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPIINGDHSRITVNTR 100 110 120 130 140 150 250 260 270 280 290 300 pF1KE5 NIFIECTGTDFTKAKIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKSHTFPELAYRKEMV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 NIFIECTGTDFTKAKIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKSHTFPELAYRKEMV 160 170 180 190 200 210 310 320 330 340 350 360 pF1KE5 RADLINKKVGIRETPENLAKLLTRMYLKSEVIGDGNQIEIEIPPTRADIIHACDIVEDAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 RADLINKKVGIRETPENLAKLLTRMYLKSEVIGDGNQIEIEIPPTRADIIHACDIVEDAA 220 230 240 250 260 270 370 380 390 400 410 420 pF1KE5 IAYGYNNIQMTLPKTYTIANQFPLNKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 IAYGYNNIQMTLPKTYTIANQFPLNKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGV 280 290 300 310 320 330 430 440 450 460 470 480 pF1KE5 DISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLFEISDIVIKDSNTDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 DISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLFEISDIVIKDSNTDV 340 350 360 370 380 390 490 500 510 520 530 540 pF1KE5 GAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLLDVPPGEDKGGYVIKASEGPAFFPGRCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLLDVPPGEDKGGYVIKASEGPAFFPGRCA 400 410 420 430 440 450 550 560 570 580 pF1KE5 EIFARGQSVGKLGVLHPDVITKFELTMPCSSLEINVGPFL :::::::::::::::::::::::::::::::::::::::: XP_011 EIFARGQSVGKLGVLHPDVITKFELTMPCSSLEINVGPFL 460 470 480 490 589 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 06:28:11 2016 done: Tue Nov 8 06:28:13 2016 Total Scan time: 8.140 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]