FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5766, 589 aa
  1>>>pF1KE5766 589 - 589 aa - 589 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7204+/-0.00119; mu= 16.2763+/- 0.071
 mean_var=62.1659+/-12.377, 0's: 0 Z-trim(100.6): 37  B-trim: 0 in 0/49
 Lambda= 0.162666
 statistics sampled from 6190 (6196) to 6190 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.551), E-opt: 0.2 (0.19), width:  16
 Scan time:  2.840

The best scores are:                                      opt bits E(32554)
CCDS2454.1 FARSB gene_id:10056|Hs108|chr2          ( 589) 3843 911.1       0


>>CCDS2454.1 FARSB gene_id:10056|Hs108|chr2               (589 aa)
 initn: 3843 init1: 3843 opt: 3843  Z-score: 4870.1  bits: 911.1 E(32554):    0
Smith-Waterman score: 3843; 100.0% identity (100.0% similar) in 589 aa overlap (1-589:1-589)

               10        20        30        40        50        60
pF1KE5 MPTVSVKRDLLFQALGRTYTDEEFDELCFEFGLELDEITSEKEIISKEQGNVKAAGASDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 MPTVSVKRDLLFQALGRTYTDEEFDELCFEFGLELDEITSEKEIISKEQGNVKAAGASDV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 VLYKIDVPANRYDLLCLEGLVRGLQVFKERIKAPVYKRVMPDGKIQKLIITEETAKIRPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 VLYKIDVPANRYDLLCLEGLVRGLQVFKERIKAPVYKRVMPDGKIQKLIITEETAKIRPF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 AVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 AVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPSD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 IKFKPLNKTKEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPIINGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 IKFKPLNKTKEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPIINGD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 HSRITVNTRNIFIECTGTDFTKAKIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKSHTFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 HSRITVNTRNIFIECTGTDFTKAKIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKSHTFP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 ELAYRKEMVRADLINKKVGIRETPENLAKLLTRMYLKSEVIGDGNQIEIEIPPTRADIIH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 ELAYRKEMVRADLINKKVGIRETPENLAKLLTRMYLKSEVIGDGNQIEIEIPPTRADIIH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE5 ACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPLNKLTELLRHDMAAAGFTEALTFALCSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 ACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPLNKLTELLRHDMAAAGFTEALTFALCSQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE5 EDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLFEISDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 EDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLFEISDI
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE5 VIKDSNTDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLLDVPPGEDKGGYVIKASEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 VIKDSNTDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLLDVPPGEDKGGYVIKASEG
              490       500       510       520       530       540

              550       560       570       580         
pF1KE5 PAFFPGRCAEIFARGQSVGKLGVLHPDVITKFELTMPCSSLEINVGPFL
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 PAFFPGRCAEIFARGQSVGKLGVLHPDVITKFELTMPCSSLEINVGPFL
              550       560       570       580         




589 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 06:28:11 2016 done: Tue Nov  8 06:28:11 2016
 Total Scan time:  2.840 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]