FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5674, 556 aa 1>>>pF1KE5674 556 - 556 aa - 556 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4234+/-0.000355; mu= 18.7690+/- 0.022 mean_var=79.1361+/-16.101, 0's: 0 Z-trim(114.2): 29 B-trim: 0 in 0/56 Lambda= 0.144174 statistics sampled from 23904 (23919) to 23904 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.646), E-opt: 0.2 (0.28), width: 16 Scan time: 9.070 The best scores are: opt bits E(85289) XP_006722020 (OMIM: 604311) PREDICTED: mediator of ( 616) 3633 765.6 0 NP_004765 (OMIM: 604311) mediator of RNA polymeras (1581) 3635 766.3 0 XP_005257522 (OMIM: 604311) PREDICTED: mediator of (1409) 2507 531.6 6.2e-150 XP_016880268 (OMIM: 604311) PREDICTED: mediator of (1362) 2194 466.5 2.4e-130 >>XP_006722020 (OMIM: 604311) PREDICTED: mediator of RNA (616 aa) initn: 3633 init1: 3633 opt: 3633 Z-score: 4083.6 bits: 765.6 E(85289): 0 Smith-Waterman score: 3633; 100.0% identity (100.0% similar) in 547 aa overlap (1-547:1-547) 10 20 30 40 50 60 pF1KE5 MKAQGETEESEKLSKMSSLLERLHAKFNQNRPWSETIKLVRQVMEKRVVMSSGGHQHLVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 MKAQGETEESEKLSKMSSLLERLHAKFNQNRPWSETIKLVRQVMEKRVVMSSGGHQHLVS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 CLETLQKALKVTSLPAMTDRLESIARQNGLGSHLSASGTECYITSDMFYVEVQLDPAGQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 CLETLQKALKVTSLPAMTDRLESIARQNGLGSHLSASGTECYITSDMFYVEVQLDPAGQL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 CDVKVAHHGENPVSCPELVQQLREKNFDEFSKHLKGLVNLYNLPGDNKLKTKMYLALQSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 CDVKVAHHGENPVSCPELVQQLREKNFDEFSKHLKGLVNLYNLPGDNKLKTKMYLALQSL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 EQDLSKMAIMYWKATNAGPLDKILHGSVGYLTPRSGGHLMNLKYYVSPSDLLDDKTASPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 EQDLSKMAIMYWKATNAGPLDKILHGSVGYLTPRSGGHLMNLKYYVSPSDLLDDKTASPI 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 ILHENNVSRSLGMNASVTIEGTSAVYKLPIAPLIMGSHPVDNKWTPSFSSITSANSVDLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 ILHENNVSRSLGMNASVTIEGTSAVYKLPIAPLIMGSHPVDNKWTPSFSSITSANSVDLP 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 ACFFLKFPQPIPVSRAFVQKLQNCTGIPLFETQPTYAPLYELITQFELSKDPDPIPLNHN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 ACFFLKFPQPIPVSRAFVQKLQNCTGIPLFETQPTYAPLYELITQFELSKDPDPIPLNHN 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE5 MRFYAALPGQQHCYFLNKDAPLPDGRSLQGTLVSKITFQHPGRVPLILNLIRHQVAYNTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 MRFYAALPGQQHCYFLNKDAPLPDGRSLQGTLVSKITFQHPGRVPLILNLIRHQVAYNTL 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE5 IGSCVKRTILKEDSPGLLQFEVCPLSESRFSVSFQHPVNDSLVCVVMDVQDSTHVSCKLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 IGSCVKRTILKEDSPGLLQFEVCPLSESRFSVSFQHPVNDSLVCVVMDVQDSTHVSCKLY 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE5 KGLSDALICTDDFIAKVVQRCMSIPVTMRAIRRKAETIQADTPALSLIAETVEDMVKKNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 KGLSDALICTDDFIAKVVQRCMSIPVTMRAIRRKAETIQADTPALSLIAETVEDMVKKNL 490 500 510 520 530 540 550 pF1KE5 PPASSPGSKNPELGSG ::::::: XP_006 PPASSPGEPGLNCFTLPENQGALHFSTGWRRRGRINQAWDTSLLSRCTHSSVSKEGKDMK 550 560 570 580 590 600 >>NP_004765 (OMIM: 604311) mediator of RNA polymerase II (1581 aa) initn: 3674 init1: 3633 opt: 3635 Z-score: 4080.1 bits: 766.3 E(85289): 0 Smith-Waterman score: 3635; 98.2% identity (98.8% similar) in 560 aa overlap (1-555:1-560) 10 20 30 40 50 60 pF1KE5 MKAQGETEESEKLSKMSSLLERLHAKFNQNRPWSETIKLVRQVMEKRVVMSSGGHQHLVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MKAQGETEESEKLSKMSSLLERLHAKFNQNRPWSETIKLVRQVMEKRVVMSSGGHQHLVS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 CLETLQKALKVTSLPAMTDRLESIARQNGLGSHLSASGTECYITSDMFYVEVQLDPAGQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 CLETLQKALKVTSLPAMTDRLESIARQNGLGSHLSASGTECYITSDMFYVEVQLDPAGQL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 CDVKVAHHGENPVSCPELVQQLREKNFDEFSKHLKGLVNLYNLPGDNKLKTKMYLALQSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 CDVKVAHHGENPVSCPELVQQLREKNFDEFSKHLKGLVNLYNLPGDNKLKTKMYLALQSL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 EQDLSKMAIMYWKATNAGPLDKILHGSVGYLTPRSGGHLMNLKYYVSPSDLLDDKTASPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 EQDLSKMAIMYWKATNAGPLDKILHGSVGYLTPRSGGHLMNLKYYVSPSDLLDDKTASPI 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 ILHENNVSRSLGMNASVTIEGTSAVYKLPIAPLIMGSHPVDNKWTPSFSSITSANSVDLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 ILHENNVSRSLGMNASVTIEGTSAVYKLPIAPLIMGSHPVDNKWTPSFSSITSANSVDLP 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 ACFFLKFPQPIPVSRAFVQKLQNCTGIPLFETQPTYAPLYELITQFELSKDPDPIPLNHN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 ACFFLKFPQPIPVSRAFVQKLQNCTGIPLFETQPTYAPLYELITQFELSKDPDPIPLNHN 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE5 MRFYAALPGQQHCYFLNKDAPLPDGRSLQGTLVSKITFQHPGRVPLILNLIRHQVAYNTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MRFYAALPGQQHCYFLNKDAPLPDGRSLQGTLVSKITFQHPGRVPLILNLIRHQVAYNTL 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE5 IGSCVKRTILKEDSPGLLQFEVCPLSESRFSVSFQHPVNDSLVCVVMDVQDSTHVSCKLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 IGSCVKRTILKEDSPGLLQFEVCPLSESRFSVSFQHPVNDSLVCVVMDVQDSTHVSCKLY 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE5 KGLSDALICTDDFIAKVVQRCMSIPVTMRAIRRKAETIQADTPALSLIAETVEDMVKKNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 KGLSDALICTDDFIAKVVQRCMSIPVTMRAIRRKAETIQADTPALSLIAETVEDMVKKNL 490 500 510 520 530 540 550 pF1KE5 PPASSPG-----SKNPELGSG ::::::: ..:: :. NP_004 PPASSPGYGMTTGNNPMSGTTTPTNTFPGGPITTLFNMSMSIKDRHESVGHGEDFSKVSQ 550 560 570 580 590 600 >>XP_005257522 (OMIM: 604311) PREDICTED: mediator of RNA (1409 aa) initn: 2546 init1: 2505 opt: 2507 Z-score: 2812.8 bits: 531.6 E(85289): 6.2e-150 Smith-Waterman score: 2507; 97.4% identity (98.2% similar) in 388 aa overlap (173-555:1-388) 150 160 170 180 190 200 pF1KE5 REKNFDEFSKHLKGLVNLYNLPGDNKLKTKMYLALQSLEQDLSKMAIMYWKATNAGPLDK :::::::::::::::::::::::::::::: XP_005 MYLALQSLEQDLSKMAIMYWKATNAGPLDK 10 20 30 210 220 230 240 250 260 pF1KE5 ILHGSVGYLTPRSGGHLMNLKYYVSPSDLLDDKTASPIILHENNVSRSLGMNASVTIEGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 ILHGSVGYLTPRSGGHLMNLKYYVSPSDLLDDKTASPIILHENNVSRSLGMNASVTIEGT 40 50 60 70 80 90 270 280 290 300 310 320 pF1KE5 SAVYKLPIAPLIMGSHPVDNKWTPSFSSITSANSVDLPACFFLKFPQPIPVSRAFVQKLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 SAVYKLPIAPLIMGSHPVDNKWTPSFSSITSANSVDLPACFFLKFPQPIPVSRAFVQKLQ 100 110 120 130 140 150 330 340 350 360 370 380 pF1KE5 NCTGIPLFETQPTYAPLYELITQFELSKDPDPIPLNHNMRFYAALPGQQHCYFLNKDAPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 NCTGIPLFETQPTYAPLYELITQFELSKDPDPIPLNHNMRFYAALPGQQHCYFLNKDAPL 160 170 180 190 200 210 390 400 410 420 430 440 pF1KE5 PDGRSLQGTLVSKITFQHPGRVPLILNLIRHQVAYNTLIGSCVKRTILKEDSPGLLQFEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 PDGRSLQGTLVSKITFQHPGRVPLILNLIRHQVAYNTLIGSCVKRTILKEDSPGLLQFEV 220 230 240 250 260 270 450 460 470 480 490 500 pF1KE5 CPLSESRFSVSFQHPVNDSLVCVVMDVQDSTHVSCKLYKGLSDALICTDDFIAKVVQRCM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 CPLSESRFSVSFQHPVNDSLVCVVMDVQDSTHVSCKLYKGLSDALICTDDFIAKVVQRCM 280 290 300 310 320 330 510 520 530 540 550 pF1KE5 SIPVTMRAIRRKAETIQADTPALSLIAETVEDMVKKNLPPASSPG-----SKNPELGSG ::::::::::::::::::::::::::::::::::::::::::::: ..:: :. XP_005 SIPVTMRAIRRKAETIQADTPALSLIAETVEDMVKKNLPPASSPGYGMTTGNNPMSGTTT 340 350 360 370 380 390 XP_005 PTNTFPGGPITTLFNMSMSIKDRHESVGHGEDFSKVSQNPILTSLLQITGNGGSTIGSSP 400 410 420 430 440 450 >>XP_016880268 (OMIM: 604311) PREDICTED: mediator of RNA (1362 aa) initn: 2233 init1: 2192 opt: 2194 Z-score: 2461.1 bits: 466.5 E(85289): 2.4e-130 Smith-Waterman score: 2194; 97.1% identity (97.9% similar) in 341 aa overlap (220-555:1-341) 190 200 210 220 230 240 pF1KE5 MYWKATNAGPLDKILHGSVGYLTPRSGGHLMNLKYYVSPSDLLDDKTASPIILHENNVSR :::::::::::::::::::::::::::::: XP_016 MNLKYYVSPSDLLDDKTASPIILHENNVSR 10 20 30 250 260 270 280 290 300 pF1KE5 SLGMNASVTIEGTSAVYKLPIAPLIMGSHPVDNKWTPSFSSITSANSVDLPACFFLKFPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 SLGMNASVTIEGTSAVYKLPIAPLIMGSHPVDNKWTPSFSSITSANSVDLPACFFLKFPQ 40 50 60 70 80 90 310 320 330 340 350 360 pF1KE5 PIPVSRAFVQKLQNCTGIPLFETQPTYAPLYELITQFELSKDPDPIPLNHNMRFYAALPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PIPVSRAFVQKLQNCTGIPLFETQPTYAPLYELITQFELSKDPDPIPLNHNMRFYAALPG 100 110 120 130 140 150 370 380 390 400 410 420 pF1KE5 QQHCYFLNKDAPLPDGRSLQGTLVSKITFQHPGRVPLILNLIRHQVAYNTLIGSCVKRTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 QQHCYFLNKDAPLPDGRSLQGTLVSKITFQHPGRVPLILNLIRHQVAYNTLIGSCVKRTI 160 170 180 190 200 210 430 440 450 460 470 480 pF1KE5 LKEDSPGLLQFEVCPLSESRFSVSFQHPVNDSLVCVVMDVQDSTHVSCKLYKGLSDALIC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LKEDSPGLLQFEVCPLSESRFSVSFQHPVNDSLVCVVMDVQDSTHVSCKLYKGLSDALIC 220 230 240 250 260 270 490 500 510 520 530 540 pF1KE5 TDDFIAKVVQRCMSIPVTMRAIRRKAETIQADTPALSLIAETVEDMVKKNLPPASSPG-- :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 TDDFIAKVVQRCMSIPVTMRAIRRKAETIQADTPALSLIAETVEDMVKKNLPPASSPGYG 280 290 300 310 320 330 550 pF1KE5 ---SKNPELGSG ..:: :. XP_016 MTTGNNPMSGTTTPTNTFPGGPITTLFNMSMSIKDRHESVGHGEDFSKVSQNPILTSLLQ 340 350 360 370 380 390 556 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 05:44:14 2016 done: Tue Nov 8 05:44:15 2016 Total Scan time: 9.070 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]