FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5674, 556 aa 1>>>pF1KE5674 556 - 556 aa - 556 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.1638+/-0.0009; mu= 14.4750+/- 0.054 mean_var=75.5533+/-15.303, 0's: 0 Z-trim(106.7): 12 B-trim: 169 in 1/50 Lambda= 0.147553 statistics sampled from 9150 (9156) to 9150 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.652), E-opt: 0.2 (0.281), width: 16 Scan time: 2.920 The best scores are: opt bits E(32554) CCDS11336.1 MED1 gene_id:5469|Hs108|chr17 (1581) 3635 783.5 0 >>CCDS11336.1 MED1 gene_id:5469|Hs108|chr17 (1581 aa) initn: 3674 init1: 3633 opt: 3635 Z-score: 4172.9 bits: 783.5 E(32554): 0 Smith-Waterman score: 3635; 98.2% identity (98.8% similar) in 560 aa overlap (1-555:1-560) 10 20 30 40 50 60 pF1KE5 MKAQGETEESEKLSKMSSLLERLHAKFNQNRPWSETIKLVRQVMEKRVVMSSGGHQHLVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MKAQGETEESEKLSKMSSLLERLHAKFNQNRPWSETIKLVRQVMEKRVVMSSGGHQHLVS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 CLETLQKALKVTSLPAMTDRLESIARQNGLGSHLSASGTECYITSDMFYVEVQLDPAGQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 CLETLQKALKVTSLPAMTDRLESIARQNGLGSHLSASGTECYITSDMFYVEVQLDPAGQL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 CDVKVAHHGENPVSCPELVQQLREKNFDEFSKHLKGLVNLYNLPGDNKLKTKMYLALQSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 CDVKVAHHGENPVSCPELVQQLREKNFDEFSKHLKGLVNLYNLPGDNKLKTKMYLALQSL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 EQDLSKMAIMYWKATNAGPLDKILHGSVGYLTPRSGGHLMNLKYYVSPSDLLDDKTASPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 EQDLSKMAIMYWKATNAGPLDKILHGSVGYLTPRSGGHLMNLKYYVSPSDLLDDKTASPI 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 ILHENNVSRSLGMNASVTIEGTSAVYKLPIAPLIMGSHPVDNKWTPSFSSITSANSVDLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 ILHENNVSRSLGMNASVTIEGTSAVYKLPIAPLIMGSHPVDNKWTPSFSSITSANSVDLP 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 ACFFLKFPQPIPVSRAFVQKLQNCTGIPLFETQPTYAPLYELITQFELSKDPDPIPLNHN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 ACFFLKFPQPIPVSRAFVQKLQNCTGIPLFETQPTYAPLYELITQFELSKDPDPIPLNHN 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE5 MRFYAALPGQQHCYFLNKDAPLPDGRSLQGTLVSKITFQHPGRVPLILNLIRHQVAYNTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MRFYAALPGQQHCYFLNKDAPLPDGRSLQGTLVSKITFQHPGRVPLILNLIRHQVAYNTL 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE5 IGSCVKRTILKEDSPGLLQFEVCPLSESRFSVSFQHPVNDSLVCVVMDVQDSTHVSCKLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 IGSCVKRTILKEDSPGLLQFEVCPLSESRFSVSFQHPVNDSLVCVVMDVQDSTHVSCKLY 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE5 KGLSDALICTDDFIAKVVQRCMSIPVTMRAIRRKAETIQADTPALSLIAETVEDMVKKNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 KGLSDALICTDDFIAKVVQRCMSIPVTMRAIRRKAETIQADTPALSLIAETVEDMVKKNL 490 500 510 520 530 540 550 pF1KE5 PPASSPG-----SKNPELGSG ::::::: ..:: :. CCDS11 PPASSPGYGMTTGNNPMSGTTTPTNTFPGGPITTLFNMSMSIKDRHESVGHGEDFSKVSQ 550 560 570 580 590 600 556 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 05:44:13 2016 done: Tue Nov 8 05:44:14 2016 Total Scan time: 2.920 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]