FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3198, 165 aa
  1>>>pF1KE3198 165 - 165 aa - 165 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2780+/-0.000611; mu= 9.9222+/- 0.037
 mean_var=113.1845+/-22.612, 0's: 0 Z-trim(116.2): 11  B-trim: 0 in 0/52
 Lambda= 0.120554
 statistics sampled from 16801 (16810) to 16801 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.83), E-opt: 0.2 (0.516), width:  16
 Scan time:  2.270

The best scores are:                                      opt bits E(32554)
CCDS42102.1 NPW gene_id:283869|Hs108|chr16         ( 165) 1140 207.5 3.1e-54


>>CCDS42102.1 NPW gene_id:283869|Hs108|chr16              (165 aa)
 initn: 1140 init1: 1140 opt: 1140  Z-score: 1087.2  bits: 207.5 E(32554): 3.1e-54
Smith-Waterman score: 1140; 100.0% identity (100.0% similar) in 165 aa overlap (1-165:1-165)

               10        20        30        40        50        60
pF1KE3 MAWRPGERGAPASRPRLALLLLLLLLPLPSGAWYKHVASPRYHTVGRAAGLLMGLRRSPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MAWRPGERGAPASRPRLALLLLLLLLPLPSGAWYKHVASPRYHTVGRAAGLLMGLRRSPY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 LWRRALRAAAGPLARDTLSPEPAAREAPLLLPSWVQELWETRRRSSQAGIPVRAPRSPRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LWRRALRAAAGPLARDTLSPEPAAREAPLLLPSWVQELWETRRRSSQAGIPVRAPRSPRA
               70        80        90       100       110       120

              130       140       150       160     
pF1KE3 PEPALEPESLDFSGAGQRLRRDVSRPAVDPAANRLGLPCLAPGPF
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PEPALEPESLDFSGAGQRLRRDVSRPAVDPAANRLGLPCLAPGPF
              130       140       150       160     




165 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 04:47:40 2016 done: Tue Nov  8 04:47:40 2016
 Total Scan time:  2.270 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]