FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5060, 393 aa 1>>>pF1KE5060 393 - 393 aa - 393 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3222+/-0.000374; mu= 16.8275+/- 0.023 mean_var=68.0249+/-13.423, 0's: 0 Z-trim(112.1): 14 B-trim: 0 in 0/51 Lambda= 0.155504 statistics sampled from 20947 (20951) to 20947 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.629), E-opt: 0.2 (0.246), width: 16 Scan time: 6.670 The best scores are: opt bits E(85289) NP_001096062 (OMIM: 612178) small RNA 2'-O-methylt ( 393) 2651 603.9 2.1e-172 NP_653185 (OMIM: 612178) small RNA 2'-O-methyltran ( 393) 2651 603.9 2.1e-172 XP_005270468 (OMIM: 612178) PREDICTED: small RNA 2 ( 401) 2608 594.3 1.7e-169 XP_016855668 (OMIM: 612178) PREDICTED: small RNA 2 ( 237) 1599 367.8 1.5e-101 >>NP_001096062 (OMIM: 612178) small RNA 2'-O-methyltrans (393 aa) initn: 2651 init1: 2651 opt: 2651 Z-score: 3216.2 bits: 603.9 E(85289): 2.1e-172 Smith-Waterman score: 2651; 99.7% identity (100.0% similar) in 393 aa overlap (1-393:1-393) 10 20 30 40 50 60 pF1KE5 MEENNLQCSSVVDGNFEEVPRETAIQFKPPLYRQRYQFVKNLVDQHEPKKVADLGCGDTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MEENNLQCSSVVDGNFEEVPRETAIQFKPPLYRQRYQFVKNLVDQHEPKKVADLGCGDTS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 LLRLLKVNPCIELLVGVDINEDKLRWRGDSLAPFLGDFLKPRDLNLTITLYHGSVVERDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LLRLLKVNPCIELLVGVDINEDKLRWRGDSLAPFLGDFLKPRDLNLTITLYHGSVVERDS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 RLLGFDLITCIELIEHLDSGDLARFPEVVFGYLSPSMIVISTPNSEFNPLFPSVTLRDSD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RLLGFDLITCIELIEHLDSGDLARFPEVVFGYLSPSMIVISTPNSEFNPLFPSVTLRDSD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 HKFEWTRMEFQTWALYVANRYDYSVEFTGVGEPPAGAENVGYCTQIGIFRKNGGKATESC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 HKFEWTRMEFQTWALYVANRYDYSVEFTGVGEPPAGAENVGYCTQIGIFRKNGGKATESC 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 LSEQHDQHVYKAVFTTSYPSLQQERFFKLVLVNEVSQQVESLRVSHLPRRKEQAGERGDK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LSEQHDQHVYKAVFTTSYPSLQQERFFKLVLVNEVSQQVESLRVSHLPRRKEQAGERGDK 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 PKDIGGSKAPVPCFGPVFTEVEKAKIENSPTPFCVGDKFFVPLQRLLAYPKLNRLCANEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PKDIGGSKAPVPCFGPVFTEVEKAKIENSPTPFCVGDKFFVPLQRLLAYPKLNRLCANEE 310 320 330 340 350 360 370 380 390 pF1KE5 IMRSVIADSIPLSSDGSAVVADLRNYFDEQFEF .:::::::::::::::::::::::::::::::: NP_001 MMRSVIADSIPLSSDGSAVVADLRNYFDEQFEF 370 380 390 >>NP_653185 (OMIM: 612178) small RNA 2'-O-methyltransfer (393 aa) initn: 2651 init1: 2651 opt: 2651 Z-score: 3216.2 bits: 603.9 E(85289): 2.1e-172 Smith-Waterman score: 2651; 99.7% identity (100.0% similar) in 393 aa overlap (1-393:1-393) 10 20 30 40 50 60 pF1KE5 MEENNLQCSSVVDGNFEEVPRETAIQFKPPLYRQRYQFVKNLVDQHEPKKVADLGCGDTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_653 MEENNLQCSSVVDGNFEEVPRETAIQFKPPLYRQRYQFVKNLVDQHEPKKVADLGCGDTS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 LLRLLKVNPCIELLVGVDINEDKLRWRGDSLAPFLGDFLKPRDLNLTITLYHGSVVERDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_653 LLRLLKVNPCIELLVGVDINEDKLRWRGDSLAPFLGDFLKPRDLNLTITLYHGSVVERDS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 RLLGFDLITCIELIEHLDSGDLARFPEVVFGYLSPSMIVISTPNSEFNPLFPSVTLRDSD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_653 RLLGFDLITCIELIEHLDSGDLARFPEVVFGYLSPSMIVISTPNSEFNPLFPSVTLRDSD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 HKFEWTRMEFQTWALYVANRYDYSVEFTGVGEPPAGAENVGYCTQIGIFRKNGGKATESC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_653 HKFEWTRMEFQTWALYVANRYDYSVEFTGVGEPPAGAENVGYCTQIGIFRKNGGKATESC 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 LSEQHDQHVYKAVFTTSYPSLQQERFFKLVLVNEVSQQVESLRVSHLPRRKEQAGERGDK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_653 LSEQHDQHVYKAVFTTSYPSLQQERFFKLVLVNEVSQQVESLRVSHLPRRKEQAGERGDK 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 PKDIGGSKAPVPCFGPVFTEVEKAKIENSPTPFCVGDKFFVPLQRLLAYPKLNRLCANEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_653 PKDIGGSKAPVPCFGPVFTEVEKAKIENSPTPFCVGDKFFVPLQRLLAYPKLNRLCANEE 310 320 330 340 350 360 370 380 390 pF1KE5 IMRSVIADSIPLSSDGSAVVADLRNYFDEQFEF .:::::::::::::::::::::::::::::::: NP_653 MMRSVIADSIPLSSDGSAVVADLRNYFDEQFEF 370 380 390 >>XP_005270468 (OMIM: 612178) PREDICTED: small RNA 2'-O- (401 aa) initn: 2607 init1: 2607 opt: 2608 Z-score: 3164.0 bits: 594.3 E(85289): 1.7e-169 Smith-Waterman score: 2608; 98.7% identity (99.5% similar) in 391 aa overlap (3-393:11-401) 10 20 30 40 50 pF1KE5 MEENNLQCSSVVDGNFEEVPRETAIQFKPPLYRQRYQFVKNLVDQHEPKKVA : ..::::::::::::::::::::::::::::::::::::::::::::: XP_005 MMEATARTKTEALVSCSSVVDGNFEEVPRETAIQFKPPLYRQRYQFVKNLVDQHEPKKVA 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE5 DLGCGDTSLLRLLKVNPCIELLVGVDINEDKLRWRGDSLAPFLGDFLKPRDLNLTITLYH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 DLGCGDTSLLRLLKVNPCIELLVGVDINEDKLRWRGDSLAPFLGDFLKPRDLNLTITLYH 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE5 GSVVERDSRLLGFDLITCIELIEHLDSGDLARFPEVVFGYLSPSMIVISTPNSEFNPLFP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 GSVVERDSRLLGFDLITCIELIEHLDSGDLARFPEVVFGYLSPSMIVISTPNSEFNPLFP 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE5 SVTLRDSDHKFEWTRMEFQTWALYVANRYDYSVEFTGVGEPPAGAENVGYCTQIGIFRKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 SVTLRDSDHKFEWTRMEFQTWALYVANRYDYSVEFTGVGEPPAGAENVGYCTQIGIFRKN 190 200 210 220 230 240 240 250 260 270 280 290 pF1KE5 GGKATESCLSEQHDQHVYKAVFTTSYPSLQQERFFKLVLVNEVSQQVESLRVSHLPRRKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 GGKATESCLSEQHDQHVYKAVFTTSYPSLQQERFFKLVLVNEVSQQVESLRVSHLPRRKE 250 260 270 280 290 300 300 310 320 330 340 350 pF1KE5 QAGERGDKPKDIGGSKAPVPCFGPVFTEVEKAKIENSPTPFCVGDKFFVPLQRLLAYPKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 QAGERGDKPKDIGGSKAPVPCFGPVFTEVEKAKIENSPTPFCVGDKFFVPLQRLLAYPKL 310 320 330 340 350 360 360 370 380 390 pF1KE5 NRLCANEEIMRSVIADSIPLSSDGSAVVADLRNYFDEQFEF ::::::::.:::::::::::::::::::::::::::::::: XP_005 NRLCANEEMMRSVIADSIPLSSDGSAVVADLRNYFDEQFEF 370 380 390 400 >>XP_016855668 (OMIM: 612178) PREDICTED: small RNA 2'-O- (237 aa) initn: 1599 init1: 1599 opt: 1599 Z-score: 1944.0 bits: 367.8 E(85289): 1.5e-101 Smith-Waterman score: 1599; 99.6% identity (100.0% similar) in 237 aa overlap (157-393:1-237) 130 140 150 160 170 180 pF1KE5 LITCIELIEHLDSGDLARFPEVVFGYLSPSMIVISTPNSEFNPLFPSVTLRDSDHKFEWT :::::::::::::::::::::::::::::: XP_016 MIVISTPNSEFNPLFPSVTLRDSDHKFEWT 10 20 30 190 200 210 220 230 240 pF1KE5 RMEFQTWALYVANRYDYSVEFTGVGEPPAGAENVGYCTQIGIFRKNGGKATESCLSEQHD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 RMEFQTWALYVANRYDYSVEFTGVGEPPAGAENVGYCTQIGIFRKNGGKATESCLSEQHD 40 50 60 70 80 90 250 260 270 280 290 300 pF1KE5 QHVYKAVFTTSYPSLQQERFFKLVLVNEVSQQVESLRVSHLPRRKEQAGERGDKPKDIGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 QHVYKAVFTTSYPSLQQERFFKLVLVNEVSQQVESLRVSHLPRRKEQAGERGDKPKDIGG 100 110 120 130 140 150 310 320 330 340 350 360 pF1KE5 SKAPVPCFGPVFTEVEKAKIENSPTPFCVGDKFFVPLQRLLAYPKLNRLCANEEIMRSVI ::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::: XP_016 SKAPVPCFGPVFTEVEKAKIENSPTPFCVGDKFFVPLQRLLAYPKLNRLCANEEMMRSVI 160 170 180 190 200 210 370 380 390 pF1KE5 ADSIPLSSDGSAVVADLRNYFDEQFEF ::::::::::::::::::::::::::: XP_016 ADSIPLSSDGSAVVADLRNYFDEQFEF 220 230 393 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 04:38:32 2016 done: Tue Nov 8 04:38:33 2016 Total Scan time: 6.670 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]