FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5060, 393 aa
  1>>>pF1KE5060 393 - 393 aa - 393 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7394+/-0.000875; mu= 14.2897+/- 0.052
 mean_var=65.8570+/-13.007, 0's: 0 Z-trim(105.5): 12  B-trim: 0 in 0/46
 Lambda= 0.158042
 statistics sampled from 8472 (8474) to 8472 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.648), E-opt: 0.2 (0.26), width:  16
 Scan time:  1.720

The best scores are:                                      opt bits E(32554)
CCDS787.1 HENMT1 gene_id:113802|Hs108|chr1         ( 393) 2651 613.4 1.1e-175


>>CCDS787.1 HENMT1 gene_id:113802|Hs108|chr1              (393 aa)
 initn: 2651 init1: 2651 opt: 2651  Z-score: 3267.3  bits: 613.4 E(32554): 1.1e-175
Smith-Waterman score: 2651; 99.7% identity (100.0% similar) in 393 aa overlap (1-393:1-393)

               10        20        30        40        50        60
pF1KE5 MEENNLQCSSVVDGNFEEVPRETAIQFKPPLYRQRYQFVKNLVDQHEPKKVADLGCGDTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MEENNLQCSSVVDGNFEEVPRETAIQFKPPLYRQRYQFVKNLVDQHEPKKVADLGCGDTS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 LLRLLKVNPCIELLVGVDINEDKLRWRGDSLAPFLGDFLKPRDLNLTITLYHGSVVERDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 LLRLLKVNPCIELLVGVDINEDKLRWRGDSLAPFLGDFLKPRDLNLTITLYHGSVVERDS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 RLLGFDLITCIELIEHLDSGDLARFPEVVFGYLSPSMIVISTPNSEFNPLFPSVTLRDSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 RLLGFDLITCIELIEHLDSGDLARFPEVVFGYLSPSMIVISTPNSEFNPLFPSVTLRDSD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 HKFEWTRMEFQTWALYVANRYDYSVEFTGVGEPPAGAENVGYCTQIGIFRKNGGKATESC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 HKFEWTRMEFQTWALYVANRYDYSVEFTGVGEPPAGAENVGYCTQIGIFRKNGGKATESC
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 LSEQHDQHVYKAVFTTSYPSLQQERFFKLVLVNEVSQQVESLRVSHLPRRKEQAGERGDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 LSEQHDQHVYKAVFTTSYPSLQQERFFKLVLVNEVSQQVESLRVSHLPRRKEQAGERGDK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 PKDIGGSKAPVPCFGPVFTEVEKAKIENSPTPFCVGDKFFVPLQRLLAYPKLNRLCANEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 PKDIGGSKAPVPCFGPVFTEVEKAKIENSPTPFCVGDKFFVPLQRLLAYPKLNRLCANEE
              310       320       330       340       350       360

              370       380       390   
pF1KE5 IMRSVIADSIPLSSDGSAVVADLRNYFDEQFEF
       .::::::::::::::::::::::::::::::::
CCDS78 MMRSVIADSIPLSSDGSAVVADLRNYFDEQFEF
              370       380       390   




393 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 04:38:32 2016 done: Tue Nov  8 04:38:32 2016
 Total Scan time:  1.720 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]