FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5694, 540 aa 1>>>pF1KE5694 540 - 540 aa - 540 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.9546+/-0.000367; mu= 16.0801+/- 0.023 mean_var=101.6462+/-20.282, 0's: 0 Z-trim(115.4): 137 B-trim: 207 in 1/54 Lambda= 0.127212 statistics sampled from 25632 (25796) to 25632 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.665), E-opt: 0.2 (0.302), width: 16 Scan time: 9.120 The best scores are: opt bits E(85289) NP_060850 (OMIM: 607618) probable ATP-dependent RN ( 540) 3518 656.5 5.7e-188 NP_004809 (OMIM: 612172) probable ATP-dependent RN ( 820) 580 117.5 1.6e-25 NP_065147 (OMIM: 606181) ATP-dependent RNA helicas ( 859) 365 78.0 1.3e-13 XP_016879601 (OMIM: 613369) PREDICTED: ATP-depende ( 775) 354 76.0 4.8e-13 XP_006721720 (OMIM: 613369) PREDICTED: ATP-depende ( 938) 354 76.0 5.5e-13 NP_031398 (OMIM: 613369) ATP-dependent RNA helicas ( 938) 354 76.0 5.5e-13 XP_016879600 (OMIM: 613369) PREDICTED: ATP-depende ( 938) 354 76.0 5.5e-13 NP_987095 (OMIM: 613369) ATP-dependent RNA helicas ( 938) 354 76.0 5.5e-13 NP_057439 (OMIM: 615428) probable ATP-dependent RN ( 455) 332 71.8 5.3e-12 NP_619526 (OMIM: 616533) probable ATP-dependent RN ( 585) 327 70.9 1.2e-11 NP_076977 (OMIM: 611665) ATP-dependent RNA helicas ( 881) 328 71.3 1.4e-11 NP_001104792 (OMIM: 611665) ATP-dependent RNA heli ( 882) 328 71.3 1.4e-11 XP_011522561 (OMIM: 613369) PREDICTED: ATP-depende ( 674) 324 70.4 2e-11 XP_011527190 (OMIM: 616621) PREDICTED: probable AT ( 827) 324 70.5 2.3e-11 NP_001244118 (OMIM: 608023) probable ATP-dependent ( 507) 310 67.8 9.4e-11 NP_061955 (OMIM: 608023) probable ATP-dependent RN ( 547) 310 67.8 9.9e-11 XP_011523824 (OMIM: 268305,608546) PREDICTED: euka ( 390) 304 66.6 1.6e-10 NP_055555 (OMIM: 268305,608546) eukaryotic initiat ( 411) 304 66.6 1.7e-10 XP_016884803 (OMIM: 300160,300958) PREDICTED: ATP- ( 475) 287 63.5 1.7e-09 XP_016884802 (OMIM: 300160,300958) PREDICTED: ATP- ( 476) 287 63.5 1.7e-09 XP_011542194 (OMIM: 300160,300958) PREDICTED: ATP- ( 598) 287 63.6 2e-09 NP_001180346 (OMIM: 300160,300958) ATP-dependent R ( 646) 287 63.6 2.1e-09 XP_006711625 (OMIM: 174300,615464) PREDICTED: prob ( 557) 286 63.4 2.1e-09 NP_001180345 (OMIM: 300160,300958) ATP-dependent R ( 661) 287 63.6 2.1e-09 NP_001347 (OMIM: 300160,300958) ATP-dependent RNA ( 662) 287 63.6 2.1e-09 NP_001307110 (OMIM: 174300,615464) probable ATP-de ( 567) 286 63.4 2.2e-09 XP_005245576 (OMIM: 174300,615464) PREDICTED: prob ( 576) 286 63.4 2.2e-09 NP_001191439 (OMIM: 602641) eukaryotic initiation ( 347) 280 62.1 3.2e-09 NP_001289481 (OMIM: 400010,415000) ATP-dependent R ( 657) 282 62.7 4e-09 NP_001116137 (OMIM: 400010,415000) ATP-dependent R ( 660) 282 62.7 4e-09 NP_004651 (OMIM: 400010,415000) ATP-dependent RNA ( 660) 282 62.7 4e-09 XP_016872399 (OMIM: 606357) PREDICTED: nucleolar R ( 661) 282 62.7 4e-09 NP_001243839 (OMIM: 606357) nucleolar RNA helicase ( 715) 282 62.7 4.3e-09 XP_011538638 (OMIM: 606357) PREDICTED: nucleolar R ( 729) 282 62.7 4.3e-09 NP_001311124 (OMIM: 400010,415000) ATP-dependent R ( 637) 281 62.5 4.5e-09 NP_004719 (OMIM: 606357) nucleolar RNA helicase 2 ( 783) 282 62.8 4.6e-09 NP_001160006 (OMIM: 605281) probable ATP-dependent ( 575) 274 61.2 1e-08 XP_011541799 (OMIM: 605281) PREDICTED: probable AT ( 678) 274 61.3 1.1e-08 NP_001136021 (OMIM: 605281) probable ATP-dependent ( 690) 274 61.3 1.2e-08 XP_011541797 (OMIM: 605281) PREDICTED: probable AT ( 698) 274 61.3 1.2e-08 NP_001160005 (OMIM: 605281) probable ATP-dependent ( 704) 274 61.3 1.2e-08 NP_077726 (OMIM: 605281) probable ATP-dependent RN ( 724) 274 61.3 1.2e-08 NP_001317367 (OMIM: 607663) ATP-dependent RNA heli ( 369) 263 59.0 2.9e-08 NP_001026895 (OMIM: 174300,615464) probable ATP-de ( 619) 265 59.6 3.3e-08 XP_011508337 (OMIM: 174300,615464) PREDICTED: prob ( 619) 265 59.6 3.3e-08 XP_016857921 (OMIM: 174300,615464) PREDICTED: prob ( 619) 265 59.6 3.3e-08 XP_016857920 (OMIM: 174300,615464) PREDICTED: prob ( 619) 265 59.6 3.3e-08 XP_011541093 (OMIM: 607663) PREDICTED: ATP-depende ( 482) 263 59.1 3.6e-08 NP_037396 (OMIM: 607663) ATP-dependent RNA helicas ( 483) 263 59.1 3.6e-08 XP_011541092 (OMIM: 607663) PREDICTED: ATP-depende ( 486) 263 59.1 3.6e-08 >>NP_060850 (OMIM: 607618) probable ATP-dependent RNA he (540 aa) initn: 3518 init1: 3518 opt: 3518 Z-score: 3495.6 bits: 656.5 E(85289): 5.7e-188 Smith-Waterman score: 3518; 100.0% identity (100.0% similar) in 540 aa overlap (1-540:1-540) 10 20 30 40 50 60 pF1KE5 MALTRPVRLFSLVTRLLLAPRRGLTVRSPDEPLPVVRIPVALQRQLEQRQSRRRNLPRPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 MALTRPVRLFSLVTRLLLAPRRGLTVRSPDEPLPVVRIPVALQRQLEQRQSRRRNLPRPV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 LVRPGPLLVSARRPELNQPARLTLGRWERAPLASQGWKSRRARRDHFSIERAQQEAPAVR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 LVRPGPLLVSARRPELNQPARLTLGRWERAPLASQGWKSRRARRDHFSIERAQQEAPAVR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 KLSSKGSFADLGLEPRVLHALQEAAPEVVQPTTVQSSTIPSLLRGRHVVCAAETGSGKTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 KLSSKGSFADLGLEPRVLHALQEAAPEVVQPTTVQSSTIPSLLRGRHVVCAAETGSGKTL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 SYLLPLLQRLLGQPSLDSLPIPAPRGLVLVPSRELAQQVRAVAQPLGRSLGLLVRDLEGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 SYLLPLLQRLLGQPSLDSLPIPAPRGLVLVPSRELAQQVRAVAQPLGRSLGLLVRDLEGG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 HGMRRIRLQLSRQPSADVLVATPGALWKALKSRLISLEQLSFLVLDEADTLLDESFLELV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 HGMRRIRLQLSRQPSADVLVATPGALWKALKSRLISLEQLSFLVLDEADTLLDESFLELV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 DYILEKSHIAEGPADLEDPFNPKAQLVLVGATFPEGVGQLLNKVASPDAVTTITSSKLHC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 DYILEKSHIAEGPADLEDPFNPKAQLVLVGATFPEGVGQLLNKVASPDAVTTITSSKLHC 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE5 IMPHVKQTFLRLKGADKVAELVHILKHRDRAERTGPSGTVLVFCNSSSTVNWLGYILDDH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 IMPHVKQTFLRLKGADKVAELVHILKHRDRAERTGPSGTVLVFCNSSSTVNWLGYILDDH 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE5 KIQHLRLQGQMPALMRVGIFQSFQKSSRDILLCTDIASRGLDSTGVELVVNYDFPPTLQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 KIQHLRLQGQMPALMRVGIFQSFQKSSRDILLCTDIASRGLDSTGVELVVNYDFPPTLQD 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE5 YIHRAGRVGRVGSEVPGTVISFVTHPWDVSLVQKIELAARRRRSLPGLASSVKEPLPQAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 YIHRAGRVGRVGSEVPGTVISFVTHPWDVSLVQKIELAARRRRSLPGLASSVKEPLPQAT 490 500 510 520 530 540 >>NP_004809 (OMIM: 612172) probable ATP-dependent RNA he (820 aa) initn: 424 init1: 253 opt: 580 Z-score: 579.0 bits: 117.5 E(85289): 1.6e-25 Smith-Waterman score: 592; 29.0% identity (58.5% similar) in 451 aa overlap (72-504:344-769) 50 60 70 80 90 100 pF1KE5 LQRQLEQRQSRRRNLPRPVLVRPGPLLVSARRPELNQPARLTLGRWERAPLASQGWKSRR :. : .: : .: . : . .. : NP_004 REQSRFYGDLMEKRRTLEEKEQEEARLRKLRKKEAKQ--RWDDRHWSQKKLDEMTDRDWR 320 330 340 350 360 370 110 120 130 140 150 160 pF1KE5 ARRDHFSIERAQQEAPA-VRKLSSKGSFADLGLEPRVLHALQEAAPEVVQPTTVQSSTIP :. .:: . : .: :. : .: :..:..... . . .:: .: ..:: NP_004 IFREDYSITTKGGKIPNPIR------SWKDSSLPPHILEVIDKCGYK--EPTPIQRQAIP 380 390 400 410 420 170 180 190 200 210 pF1KE5 SLLRGRHVVCAAETGSGKTLSYLLPLLQRLLGQPSLDSLPIP--APRGLVLVPSRELAQQ :..: .. .:::::::: ..:.::: . :..: . .: ...:.:.:::::: NP_004 IGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTRELAQQ 430 440 450 460 470 480 220 230 240 250 260 270 pF1KE5 VRAVAQPLGRSLGLLVRDLEGGHGMRRIRLQLSRQPSADVLVATPGALWKALKSRLISLE .. . .:. :: .: . :. : . . . ....:::: : .:..: . : NP_004 IEEETIKFGKPLG--IRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLS 490 500 510 520 530 540 280 290 300 310 320 pF1KE5 QLSFLVLDEADTLLDESFLELVDYILEKSHIAEGPADLEDPFNPKA-------------Q . ...:::::: ..: .: :. :::. ... : .. .:. : NP_004 RCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQ 550 560 570 580 590 600 330 340 350 360 370 380 pF1KE5 LVLVGATFPEGVGQLLNKVASPDAVTTITSSKLHCIMPH--VKQTFLRLKGADKVAELVH :. ::.: .: .: . ::. : :. :: :.: . .. ..: .:. NP_004 TVMFTATMPPAVERLARSYLRRPAVVYIGSAG----KPHERVEQKVFLMSESEKRKKLLA 610 620 630 640 650 390 400 410 420 430 440 pF1KE5 ILKHRDRAERTGPSGTVLVFCNSSSTVNWLGYILDDHKIQHLRLQGQMPALMRVGIFQSF ::.. : . ...: :... . :. :. . :.: .: .... NP_004 ILEQ-------GFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNL 660 670 680 690 700 710 450 460 470 480 490 500 pF1KE5 QKSSRDILLCTDIASRGLDSTGVELVVNYDFPPTLQDYIHRAGRVGRVGSEVPGTVISFV . ...:::. ::.:.::.: : .:::::. ...::::: ::.::.:. :..:.:. NP_004 KAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGK--SGVAITFL 720 730 740 750 760 510 520 530 540 pF1KE5 THPWDVSLVQKIELAARRRRSLPGLASSVKEPLPQAT : NP_004 TKEDSAVFYELKQAILESPVSSCPPELANHPDAQHKPGTILTKKRREETIFA 770 780 790 800 810 820 >>NP_065147 (OMIM: 606181) ATP-dependent RNA helicase DD (859 aa) initn: 450 init1: 190 opt: 365 Z-score: 365.5 bits: 78.0 E(85289): 1.3e-13 Smith-Waterman score: 395; 29.3% identity (57.1% similar) in 338 aa overlap (206-526:390-713) 180 190 200 210 220 230 pF1KE5 SGKTLSYLLPLLQRLLGQPSLDSLPIPAPRGLVLVPSRELAQQVRAVAQPLGRSLGLLVR ::::.:.:::: ::. . ..: :. . NP_065 NLDKEQTGNLKQELDDKSATCKAYPKRPLLGLVLTPTRELAVQVKQHIDAVARFTGIKTA 360 370 380 390 400 410 240 250 260 270 280 290 pF1KE5 DLEGGHGMRRIRLQLSRQPSADVLVATPGALWKALKSR---LISLEQLSFLVLDEADTLL : :: . .. . .:.:.: ...::::: ::. .: . : .:.:: ::.:::: .. NP_065 ILVGGMSTQKQQRMLNRRP--EIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADRMV 420 430 440 450 460 470 300 310 320 330 340 350 pF1KE5 DESFLELVDYILEKSHIAEGPADLEDPFNPKAQLVLVGATFPEGVGQLLNKVASPDAVTT ... . .. .:: . .. .::: : .. .::. : : .. . NP_065 EKGHFAELSQLLEMLN--------DSQYNPKRQTLVFSATLTL-VHQAPARILHKKHTKK 480 490 500 510 520 360 370 380 390 pF1KE5 IT-SSKLHCIMPHV----KQTFLRLKGADKVAELVHILK-HRDRAERT--------GPSG . ..:: .: .. : . : . ..: . : : . :. : NP_065 MDKTAKLDLLMQKIGMRGKPKVIDLTRNEATVETLTETKIHCETDEKDFYLYYFLMQYPG 530 540 550 560 570 580 400 410 420 430 440 450 pF1KE5 TVLVFCNSSSTVNWLGYILDDHKIQHLRLQGQMPALMRVGIFQSFQKSSRDILLCTDIAS ::: :: : .. :. .: :. : :.. : .:. ...: . .:: ::.:. NP_065 RSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAA 590 600 610 620 630 640 460 470 480 490 500 510 pF1KE5 RGLDSTGVELVVNYDFPPTLQDYIHRAGRVGRVGSEVPGTVISFVTHPWDVSLVQKIELA :::: :. :..:. : : . :.::.::..:. .: : . .. : :: .:: . NP_065 RGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNE--GLSLMLIG-PEDVINFKKIYKT 650 660 670 680 690 700 520 530 540 pF1KE5 ARRRRSLPGLASSVKEPLPQAT .. ...: NP_065 LKKDEDIPLFPVQTKYMDVVKERIRLARQIEKSEYRNFQACLHNSWIEQAAAALEIELEE 710 720 730 740 750 760 >>XP_016879601 (OMIM: 613369) PREDICTED: ATP-dependent R (775 aa) initn: 416 init1: 140 opt: 354 Z-score: 355.2 bits: 76.0 E(85289): 4.8e-13 Smith-Waterman score: 519; 30.0% identity (60.2% similar) in 397 aa overlap (127-518:91-457) 100 110 120 130 140 150 pF1KE5 WKSRRARRDHFSIERAQQEAPAVRKLSSKGSFADLGLEPRVLHALQEAAPEVVQPTTVQS ::: .:.. ...: .... : .::: .: XP_016 ITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKS--EYTQPTPIQC 70 80 90 100 110 160 170 180 190 200 210 pF1KE5 STIPSLLRGRHVVCAAETGSGKTLSYLLPLLQRLLGQPSLDSLPIPAPRGLVLVPSRELA . .: : :: .. :.:::::: ... :.: ... : :. : .: .... :.::: XP_016 QGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELE--PGDGPIAVIVCPTRELC 120 130 140 150 160 170 220 230 240 250 260 270 pF1KE5 QQVRAVAQPLGRSLGLLVRDLEGGHGMRRIRLQLSRQPSADVLVATPGALWKALKSRLIS ::..: . .:.. .: . :: .: . : : .:...: ::: : .:.. . XP_016 QQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKAL--QEGAEIVVCTPGRLIDHVKKKATN 180 190 200 210 220 230 280 290 300 310 320 330 pF1KE5 LEQLSFLVLDEADTLLDESFLELVDYILEKSHIAEGPADLEDPFNPKAQLVLVGATFPEG :...:.::.:::: ..: .: : : ::. : : .: .::: . XP_016 LQRVSYLVFDEADRMFDMGFEYQVRSI--ASHV-----------RPDRQTLLFSATFRKK 240 250 260 270 280 340 350 360 370 380 390 pF1KE5 VGQLLNKVASPDAVTTITSSKLHCIMPHVKQTFLRLK-GADKVAELVHILKHRDRAERTG . .: . : . .... . : : :. : .: :. : .: :. XP_016 IEKLARDILI-DPIR-VVQGDIGEANEDVTQIVEILHSGPSKWNWLT-----RRLVEFTS 290 300 310 320 330 400 410 420 430 440 450 pF1KE5 PSGTVLVFCNSSSTVNWLGYILDDHKIQHLRLQGQMPALMRVGIFQSFQKSSRDILLCTD ::.::.: ....... :. : .. . :.:.: : ....:.:.. .:. :: XP_016 -SGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATD 340 350 360 370 380 390 460 470 480 490 500 510 pF1KE5 IASRGLDSTGVELVVNYDFPPTLQDYIHRAGRVGRVGSEVPGTVISFVTHPWDVS----L .:.:::: ... :.::: .. . :: ::.::.: . :.. ...: : : . : XP_016 VAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEK--GVAYTLLT-PKDSNFAGDL 400 410 420 430 440 450 520 530 540 pF1KE5 VQKIELAARRRRSLPGLASSVKEPLPQAT :...: : XP_016 VRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGYRERPGLGSENMDR 460 470 480 490 500 510 >>XP_006721720 (OMIM: 613369) PREDICTED: ATP-dependent R (938 aa) initn: 416 init1: 140 opt: 354 Z-score: 354.1 bits: 76.0 E(85289): 5.5e-13 Smith-Waterman score: 519; 30.0% identity (60.2% similar) in 397 aa overlap (127-518:254-620) 100 110 120 130 140 150 pF1KE5 WKSRRARRDHFSIERAQQEAPAVRKLSSKGSFADLGLEPRVLHALQEAAPEVVQPTTVQS ::: .:.. ...: .... : .::: .: XP_006 ITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKS--EYTQPTPIQC 230 240 250 260 270 280 160 170 180 190 200 210 pF1KE5 STIPSLLRGRHVVCAAETGSGKTLSYLLPLLQRLLGQPSLDSLPIPAPRGLVLVPSRELA . .: : :: .. :.:::::: ... :.: ... : :. : .: .... :.::: XP_006 QGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELE--PGDGPIAVIVCPTRELC 290 300 310 320 330 220 230 240 250 260 270 pF1KE5 QQVRAVAQPLGRSLGLLVRDLEGGHGMRRIRLQLSRQPSADVLVATPGALWKALKSRLIS ::..: . .:.. .: . :: .: . : : .:...: ::: : .:.. . XP_006 QQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKAL--QEGAEIVVCTPGRLIDHVKKKATN 340 350 360 370 380 390 280 290 300 310 320 330 pF1KE5 LEQLSFLVLDEADTLLDESFLELVDYILEKSHIAEGPADLEDPFNPKAQLVLVGATFPEG :...:.::.:::: ..: .: : : ::. : : .: .::: . XP_006 LQRVSYLVFDEADRMFDMGFEYQVRSI--ASHV-----------RPDRQTLLFSATFRKK 400 410 420 430 440 340 350 360 370 380 390 pF1KE5 VGQLLNKVASPDAVTTITSSKLHCIMPHVKQTFLRLK-GADKVAELVHILKHRDRAERTG . .: . : . .... . : : :. : .: :. : .: :. XP_006 IEKLARDILI-DPIR-VVQGDIGEANEDVTQIVEILHSGPSKWNWLT-----RRLVEFTS 450 460 470 480 490 400 410 420 430 440 450 pF1KE5 PSGTVLVFCNSSSTVNWLGYILDDHKIQHLRLQGQMPALMRVGIFQSFQKSSRDILLCTD ::.::.: ....... :. : .. . :.:.: : ....:.:.. .:. :: XP_006 -SGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATD 500 510 520 530 540 550 460 470 480 490 500 510 pF1KE5 IASRGLDSTGVELVVNYDFPPTLQDYIHRAGRVGRVGSEVPGTVISFVTHPWDVS----L .:.:::: ... :.::: .. . :: ::.::.: . :.. ...: : : . : XP_006 VAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEK--GVAYTLLT-PKDSNFAGDL 560 570 580 590 600 610 520 530 540 pF1KE5 VQKIELAARRRRSLPGLASSVKEPLPQAT :...: : XP_006 VRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGYRERPGLGSENMDR 620 630 640 650 660 670 >>NP_031398 (OMIM: 613369) ATP-dependent RNA helicase DD (938 aa) initn: 416 init1: 140 opt: 354 Z-score: 354.1 bits: 76.0 E(85289): 5.5e-13 Smith-Waterman score: 519; 30.0% identity (60.2% similar) in 397 aa overlap (127-518:254-620) 100 110 120 130 140 150 pF1KE5 WKSRRARRDHFSIERAQQEAPAVRKLSSKGSFADLGLEPRVLHALQEAAPEVVQPTTVQS ::: .:.. ...: .... : .::: .: NP_031 ITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKS--EYTQPTPIQC 230 240 250 260 270 280 160 170 180 190 200 210 pF1KE5 STIPSLLRGRHVVCAAETGSGKTLSYLLPLLQRLLGQPSLDSLPIPAPRGLVLVPSRELA . .: : :: .. :.:::::: ... :.: ... : :. : .: .... :.::: NP_031 QGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELE--PGDGPIAVIVCPTRELC 290 300 310 320 330 220 230 240 250 260 270 pF1KE5 QQVRAVAQPLGRSLGLLVRDLEGGHGMRRIRLQLSRQPSADVLVATPGALWKALKSRLIS ::..: . .:.. .: . :: .: . : : .:...: ::: : .:.. . NP_031 QQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKAL--QEGAEIVVCTPGRLIDHVKKKATN 340 350 360 370 380 390 280 290 300 310 320 330 pF1KE5 LEQLSFLVLDEADTLLDESFLELVDYILEKSHIAEGPADLEDPFNPKAQLVLVGATFPEG :...:.::.:::: ..: .: : : ::. : : .: .::: . NP_031 LQRVSYLVFDEADRMFDMGFEYQVRSI--ASHV-----------RPDRQTLLFSATFRKK 400 410 420 430 440 340 350 360 370 380 390 pF1KE5 VGQLLNKVASPDAVTTITSSKLHCIMPHVKQTFLRLK-GADKVAELVHILKHRDRAERTG . .: . : . .... . : : :. : .: :. : .: :. NP_031 IEKLARDILI-DPIR-VVQGDIGEANEDVTQIVEILHSGPSKWNWLT-----RRLVEFTS 450 460 470 480 490 400 410 420 430 440 450 pF1KE5 PSGTVLVFCNSSSTVNWLGYILDDHKIQHLRLQGQMPALMRVGIFQSFQKSSRDILLCTD ::.::.: ....... :. : .. . :.:.: : ....:.:.. .:. :: NP_031 -SGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATD 500 510 520 530 540 550 460 470 480 490 500 510 pF1KE5 IASRGLDSTGVELVVNYDFPPTLQDYIHRAGRVGRVGSEVPGTVISFVTHPWDVS----L .:.:::: ... :.::: .. . :: ::.::.: . :.. ...: : : . : NP_031 VAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEK--GVAYTLLT-PKDSNFAGDL 560 570 580 590 600 610 520 530 540 pF1KE5 VQKIELAARRRRSLPGLASSVKEPLPQAT :...: : NP_031 VRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGYRERPGLGSENMDR 620 630 640 650 660 670 >>XP_016879600 (OMIM: 613369) PREDICTED: ATP-dependent R (938 aa) initn: 416 init1: 140 opt: 354 Z-score: 354.1 bits: 76.0 E(85289): 5.5e-13 Smith-Waterman score: 519; 30.0% identity (60.2% similar) in 397 aa overlap (127-518:254-620) 100 110 120 130 140 150 pF1KE5 WKSRRARRDHFSIERAQQEAPAVRKLSSKGSFADLGLEPRVLHALQEAAPEVVQPTTVQS ::: .:.. ...: .... : .::: .: XP_016 ITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKS--EYTQPTPIQC 230 240 250 260 270 280 160 170 180 190 200 210 pF1KE5 STIPSLLRGRHVVCAAETGSGKTLSYLLPLLQRLLGQPSLDSLPIPAPRGLVLVPSRELA . .: : :: .. :.:::::: ... :.: ... : :. : .: .... :.::: XP_016 QGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELE--PGDGPIAVIVCPTRELC 290 300 310 320 330 220 230 240 250 260 270 pF1KE5 QQVRAVAQPLGRSLGLLVRDLEGGHGMRRIRLQLSRQPSADVLVATPGALWKALKSRLIS ::..: . .:.. .: . :: .: . : : .:...: ::: : .:.. . XP_016 QQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKAL--QEGAEIVVCTPGRLIDHVKKKATN 340 350 360 370 380 390 280 290 300 310 320 330 pF1KE5 LEQLSFLVLDEADTLLDESFLELVDYILEKSHIAEGPADLEDPFNPKAQLVLVGATFPEG :...:.::.:::: ..: .: : : ::. : : .: .::: . XP_016 LQRVSYLVFDEADRMFDMGFEYQVRSI--ASHV-----------RPDRQTLLFSATFRKK 400 410 420 430 440 340 350 360 370 380 390 pF1KE5 VGQLLNKVASPDAVTTITSSKLHCIMPHVKQTFLRLK-GADKVAELVHILKHRDRAERTG . .: . : . .... . : : :. : .: :. : .: :. XP_016 IEKLARDILI-DPIR-VVQGDIGEANEDVTQIVEILHSGPSKWNWLT-----RRLVEFTS 450 460 470 480 490 400 410 420 430 440 450 pF1KE5 PSGTVLVFCNSSSTVNWLGYILDDHKIQHLRLQGQMPALMRVGIFQSFQKSSRDILLCTD ::.::.: ....... :. : .. . :.:.: : ....:.:.. .:. :: XP_016 -SGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATD 500 510 520 530 540 550 460 470 480 490 500 510 pF1KE5 IASRGLDSTGVELVVNYDFPPTLQDYIHRAGRVGRVGSEVPGTVISFVTHPWDVS----L .:.:::: ... :.::: .. . :: ::.::.: . :.. ...: : : . : XP_016 VAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEK--GVAYTLLT-PKDSNFAGDL 560 570 580 590 600 610 520 530 540 pF1KE5 VQKIELAARRRRSLPGLASSVKEPLPQAT :...: : XP_016 VRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGYRERPGLGSENMDR 620 630 640 650 660 670 >>NP_987095 (OMIM: 613369) ATP-dependent RNA helicase DD (938 aa) initn: 416 init1: 140 opt: 354 Z-score: 354.1 bits: 76.0 E(85289): 5.5e-13 Smith-Waterman score: 519; 30.0% identity (60.2% similar) in 397 aa overlap (127-518:254-620) 100 110 120 130 140 150 pF1KE5 WKSRRARRDHFSIERAQQEAPAVRKLSSKGSFADLGLEPRVLHALQEAAPEVVQPTTVQS ::: .:.. ...: .... : .::: .: NP_987 ITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKS--EYTQPTPIQC 230 240 250 260 270 280 160 170 180 190 200 210 pF1KE5 STIPSLLRGRHVVCAAETGSGKTLSYLLPLLQRLLGQPSLDSLPIPAPRGLVLVPSRELA . .: : :: .. :.:::::: ... :.: ... : :. : .: .... :.::: NP_987 QGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELE--PGDGPIAVIVCPTRELC 290 300 310 320 330 220 230 240 250 260 270 pF1KE5 QQVRAVAQPLGRSLGLLVRDLEGGHGMRRIRLQLSRQPSADVLVATPGALWKALKSRLIS ::..: . .:.. .: . :: .: . : : .:...: ::: : .:.. . NP_987 QQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKAL--QEGAEIVVCTPGRLIDHVKKKATN 340 350 360 370 380 390 280 290 300 310 320 330 pF1KE5 LEQLSFLVLDEADTLLDESFLELVDYILEKSHIAEGPADLEDPFNPKAQLVLVGATFPEG :...:.::.:::: ..: .: : : ::. : : .: .::: . NP_987 LQRVSYLVFDEADRMFDMGFEYQVRSI--ASHV-----------RPDRQTLLFSATFRKK 400 410 420 430 440 340 350 360 370 380 390 pF1KE5 VGQLLNKVASPDAVTTITSSKLHCIMPHVKQTFLRLK-GADKVAELVHILKHRDRAERTG . .: . : . .... . : : :. : .: :. : .: :. NP_987 IEKLARDILI-DPIR-VVQGDIGEANEDVTQIVEILHSGPSKWNWLT-----RRLVEFTS 450 460 470 480 490 400 410 420 430 440 450 pF1KE5 PSGTVLVFCNSSSTVNWLGYILDDHKIQHLRLQGQMPALMRVGIFQSFQKSSRDILLCTD ::.::.: ....... :. : .. . :.:.: : ....:.:.. .:. :: NP_987 -SGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATD 500 510 520 530 540 550 460 470 480 490 500 510 pF1KE5 IASRGLDSTGVELVVNYDFPPTLQDYIHRAGRVGRVGSEVPGTVISFVTHPWDVS----L .:.:::: ... :.::: .. . :: ::.::.: . :.. ...: : : . : NP_987 VAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEK--GVAYTLLT-PKDSNFAGDL 560 570 580 590 600 610 520 530 540 pF1KE5 VQKIELAARRRRSLPGLASSVKEPLPQAT :...: : NP_987 VRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGYRERPGLGSENMDR 620 630 640 650 660 670 >>NP_057439 (OMIM: 615428) probable ATP-dependent RNA he (455 aa) initn: 490 init1: 243 opt: 332 Z-score: 336.5 bits: 71.8 E(85289): 5.3e-12 Smith-Waterman score: 627; 34.6% identity (60.8% similar) in 436 aa overlap (102-534:3-395) 80 90 100 110 120 130 pF1KE5 RRPELNQPARLTLGRWERAPLASQGWKSRRARRDHFSIERAQQEAPAVRKLSSKGSFADL : ..: : .:.: : :.. .: .: :: NP_057 MAAPEEHDSPTEASQ--PIVEEEETK-TFKDL 10 20 140 150 160 170 180 pF1KE5 GLEPRVLHALQEAAPEV--VQPTTVQSSTIPSLLRGRHVVCAAETGSGKTLSYLLPLLQR : : .: :: .. ..:: .: .:: :.:: .. :::::::: .. ::.:. NP_057 G----VTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNA 30 40 50 60 70 80 190 200 210 220 230 240 pF1KE5 LLGQPSLDSLPIPAPRGLVLVPSRELAQQVRAVAQPLGRSLGLLVRDLEGGHGMRRIRLQ :: :. : .:::.:.:::: :. . :: :.:. . :: : NP_057 LLETPQ--RL-----FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLA 90 100 110 120 130 250 260 270 280 290 300 pF1KE5 LSRQPSADVLVATPGALWKALK-SRLISLEQLSFLVLDEADTLLDESFLELVDYILEKSH :...: ...:::: : :. .. ..:. :..::.:::: .:. .: :: ::. NP_057 LAKKPH--IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVI- 140 150 160 170 180 190 310 320 330 340 350 360 pF1KE5 IAEGPADLEDPFNPKAQLVLVGATFPEGVGQLLNKVASPDAVTTITSSKLHCIMPHVKQT : : . : .::. . : : :...: . : .::: . . ...: NP_057 ----PRD--------RKTFLFSATMTKKV-QKLQRAALKNPVKCAVSSKYQTV-EKLQQY 200 210 220 230 240 370 380 390 400 410 420 pF1KE5 FLRLKGADKVAELVHILKHRDRAERTGPSGTVLVFCNSSSTVNWLGYILDDHKIQHLRLQ .. . . : . ::.::. : .: : ..::.. .... . .: . . . :. NP_057 YIFIPSKFKDTYLVYILN-----ELAGNS--FMIFCSTCNNTQRTALLLRNLGFTAIPLH 250 260 270 280 290 430 440 450 460 470 480 pF1KE5 GQMPALMRVGIFQSFQKSSRDILLCTDIASRGLDSTGVELVVNYDFPPTLQDYIHRAGRV ::: :.: ...:. ..:.::: ::.:::::: :..:::.:.: .:::::.::. NP_057 GQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRT 300 310 320 330 340 350 490 500 510 520 530 540 pF1KE5 GRVGSEVPGTVISFVTHPWDVSLVQKIELAARRRRSLPGLASSVKEPLPQAT .:.: : .:.:::. .:: : :.:: .. :::. .. : NP_057 ARAGRS--GKAITFVTQ-YDVELFQRIEHLIGKK--LPGFPTQDDEVMMLTERVAEAQRF 360 370 380 390 400 NP_057 ARMELREHGEKKKRSREDAGDNDDTEGAIGVRNKVAGGKMKKRKGR 410 420 430 440 450 >>NP_619526 (OMIM: 616533) probable ATP-dependent RNA he (585 aa) initn: 390 init1: 135 opt: 327 Z-score: 330.1 bits: 70.9 E(85289): 1.2e-11 Smith-Waterman score: 383; 26.9% identity (55.1% similar) in 479 aa overlap (27-454:122-585) 10 20 30 40 50 pF1KE5 MALTRPVRLFSLVTRLLLAPRRGLTVRSPDEPLPVVRIPVALQRQL----EQRQSR : : : . : : .:. : .. NP_619 APGSLLHHASPTQTMAAADGSLFDNPRTFSRRP--PAQASRQAKATKRKYQASSEAPPAK 100 110 120 130 140 60 70 80 90 100 pF1KE5 RRN----LP-RPVLVRPGPLLVSARRPELNQPARLTLGRWERAPLASQGWKSRRARRDHF ::: :: . . :. .. .. .: . ... .: : :. ... NP_619 RRNETSFLPAKKTSVKETQRTFKGNAQKMFSPKKHSVSTSDRNQEERQCIKTSSLFKNNP 150 160 170 180 190 200 110 120 130 140 150 160 pF1KE5 SIERAQQEAPAVRKLSSK----GSFADLGLEPRVLHALQEAAPEVVQPTTVQSSTIPSLL .: . .. :.:.... : ..: .:::.:... ... . .. . :.::...:: :: NP_619 DIPELHR--PVVKQVQEKVFTSAAFHELGLHPHLISTINTVL-KMSSMTSVQKQSIPVLL 210 220 230 240 250 260 170 180 190 200 210 220 pF1KE5 RGRHVVCAAETGSGKTLSYLLPLLQRLLGQPSLDSLPIPAPRGLVLVPSRELAQQVRAVA .:: .. ..:::::::.: .:..: : .. : . .: .:::::.:::: : .. NP_619 EGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRS-DGPYALVLVPTRELALQSFDTV 270 280 290 300 310 320 230 240 250 260 270 280 pF1KE5 QPLGRSLGLLVRDLEGGHGMRRIRLQLSRQPSADVLVATPGALWKALKS-RLISLEQLSF : : . . .: . : : .: . . . ..:..::: : .:: . : . .: . NP_619 QKLLKPFTWIVPGVLMG-GEKRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFSRLRW 330 340 350 360 370 380 290 300 310 pF1KE5 LVLDEADTLLDESFLELVDYILE--------------KSHIAEGP---AD--LEDP---- ::.:::: .:: .: . . ::. .. ..:: :: :.:: NP_619 LVFDEADRILDLGFEKDITVILNAVNAECQKRQNVLLSATLTEGVTRLADISLHDPVSIS 390 400 410 420 430 440 320 330 340 350 360 pF1KE5 --------FNPKAQLVLVGATFPEGVGQLLNKVASPDAV---TTITSSKLH--CIMPHVK .::: . : . : .:. :.. : :... .:.. :::. :. . NP_619 VLDKSHDQLNPKDKAV--QEVCPPPAGDKLDSFAIPESLKQHVTVVPSKLRLVCLAAFIL 450 460 470 480 490 500 370 380 390 400 410 420 pF1KE5 QTFLRLKGADKVAELVHILKHRDRAERTGPSGTVLVFCNSSSTVNWLGYILD-DHKIQHL : . : .. ..: ... . .: . : ::: . : . . . ... : NP_619 Q---KCK-FEEDQKMVVFFSSCELVEFH--YSLFLQTLLSSSGAPASGQLPSASMRLKFL 510 520 530 540 550 430 440 450 460 470 480 pF1KE5 RLQGQMPALMRVGIFQSFQKSSRDILLCTDIASRGLDSTGVELVVNYDFPPTLQDYIHRA ::.: : :...:: :..: : .:::: NP_619 RLHGGMEQEERTAVFQEFSHSRRGVLLCT 560 570 580 540 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 04:17:02 2016 done: Tue Nov 8 04:17:04 2016 Total Scan time: 9.120 Total Display time: 0.060 Function used was FASTA [36.3.4 Apr, 2011]