FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5008, 335 aa 1>>>pF1KE5008 335 - 335 aa - 335 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 10.2984+/-0.00108; mu= -5.2906+/- 0.064 mean_var=297.8652+/-61.606, 0's: 0 Z-trim(112.5): 22 B-trim: 99 in 2/52 Lambda= 0.074313 statistics sampled from 13277 (13288) to 13277 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.743), E-opt: 0.2 (0.408), width: 16 Scan time: 3.110 The best scores are: opt bits E(32554) CCDS10564.1 NDE1 gene_id:54820|Hs108|chr16 ( 335) 2144 242.9 2.8e-64 CCDS32564.1 NDEL1 gene_id:81565|Hs108|chr17 ( 328) 1133 134.5 1.2e-31 CCDS11143.1 NDEL1 gene_id:81565|Hs108|chr17 ( 345) 1133 134.5 1.2e-31 CCDS82070.1 NDEL1 gene_id:81565|Hs108|chr17 ( 269) 1046 125.1 6.4e-29 >>CCDS10564.1 NDE1 gene_id:54820|Hs108|chr16 (335 aa) initn: 2144 init1: 2144 opt: 2144 Z-score: 1267.6 bits: 242.9 E(32554): 2.8e-64 Smith-Waterman score: 2144; 100.0% identity (100.0% similar) in 335 aa overlap (1-335:1-335) 10 20 30 40 50 60 pF1KE5 MEDSGKTFSSEEEEANYWKDLAMTYKQRAENTQEELREFQEGSREYEAELETQLQQIETR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 MEDSGKTFSSEEEEANYWKDLAMTYKQRAENTQEELREFQEGSREYEAELETQLQQIETR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 NRDLLSENNRLRMELETIKEKFEVQHSEGYRQISALEDDLAQTKAIKDQLQKYIRELEQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 NRDLLSENNRLRMELETIKEKFEVQHSEGYRQISALEDDLAQTKAIKDQLQKYIRELEQA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 NDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKENLLESVQRLKDEARDLRQEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 NDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKENLLESVQRLKDEARDLRQEL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 AVQQKQEKPRTPMPSSVEAERTDTAVQATGSVPSTPIAHRGPSSSLNTPGSFRRGLDDST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 AVQQKQEKPRTPMPSSVEAERTDTAVQATGSVPSTPIAHRGPSSSLNTPGSFRRGLDDST 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 GGTPLTPAARISALNIVGDLLRKVGALESKLASCRNLVYDQSPNRTGGPASGRSSKNRDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 GGTPLTPAARISALNIVGDLLRKVGALESKLASCRNLVYDQSPNRTGGPASGRSSKNRDG 250 260 270 280 290 300 310 320 330 pF1KE5 GERRPSSTSVPLGDKGLDTSCRWLSKSTTRSSSSC ::::::::::::::::::::::::::::::::::: CCDS10 GERRPSSTSVPLGDKGLDTSCRWLSKSTTRSSSSC 310 320 330 >>CCDS32564.1 NDEL1 gene_id:81565|Hs108|chr17 (328 aa) initn: 1134 init1: 836 opt: 1133 Z-score: 682.0 bits: 134.5 E(32554): 1.2e-31 Smith-Waterman score: 1133; 59.4% identity (81.9% similar) in 315 aa overlap (8-316:9-315) 10 20 30 40 50 pF1KE5 MEDSGKTFSSEEEEANYWKDLAMTYKQRAENTQEELREFQEGSREYEAELETQLQQIET ::: .::. :::.:.. ::: .....:: :::::::: :::::.:: : : CCDS32 MDGEDIPDFSSLKEETAYWKELSLKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQ 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE5 RNRDLLSENNRLRMELETIKEKFEVQHSEGYRQISALEDDLAQTKAIKDQLQKYIRELEQ ::::: ..:.::..:.:..:::.: :....:.:.:.:::::.::.:::.::.::.::::: CCDS32 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE5 ANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKENLLESVQRLKDEARDLRQE :::::::::::::.:::::::::::::::::::::::::::.:: ::::::::::::::: CCDS32 ANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQE 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE5 LAVQQKQEK-PRTPMPSS--VEAERTDTAVQATGSVPSTPIAHRGPSSSLNTPGSFRRGL :::...:.. : ::: .. :. :.::::. :.:.::.. .: ... .: ... CCDS32 LAVRERQQEVTRKSAPSSPTLDCEKMDSAVQASLSLPATPVG-KGTENTFPSP----KAI 190 200 210 220 230 240 250 260 270 280 290 pF1KE5 DDSTGGTPLTPAARISALNIVGDLLRKVGALESKLASCRNLVYDQSPNRT---GGPASGR .. : .::::.::::::::::::::::::::::::.:::.. ::. .. :. : CCDS32 PNGFGTSPLTPSARISALNIVGDLLRKVGALESKLAACRNFAKDQASRKSYISGNVNCGV 240 250 260 270 280 290 300 310 320 330 pF1KE5 SSKNRDGGERRPSSTSVPLGDKGLDTSCRWLSKSTTRSSSSC . : : . : . . ::: CCDS32 LNGN---GTKFSRSGHTSFFDKGQEKVIFPTLFMGQ 300 310 320 >>CCDS11143.1 NDEL1 gene_id:81565|Hs108|chr17 (345 aa) initn: 1134 init1: 836 opt: 1133 Z-score: 681.7 bits: 134.5 E(32554): 1.2e-31 Smith-Waterman score: 1133; 59.4% identity (81.9% similar) in 315 aa overlap (8-316:9-315) 10 20 30 40 50 pF1KE5 MEDSGKTFSSEEEEANYWKDLAMTYKQRAENTQEELREFQEGSREYEAELETQLQQIET ::: .::. :::.:.. ::: .....:: :::::::: :::::.:: : : CCDS11 MDGEDIPDFSSLKEETAYWKELSLKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQ 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE5 RNRDLLSENNRLRMELETIKEKFEVQHSEGYRQISALEDDLAQTKAIKDQLQKYIRELEQ ::::: ..:.::..:.:..:::.: :....:.:.:.:::::.::.:::.::.::.::::: CCDS11 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE5 ANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKENLLESVQRLKDEARDLRQE :::::::::::::.:::::::::::::::::::::::::::.:: ::::::::::::::: CCDS11 ANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQE 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE5 LAVQQKQEK-PRTPMPSS--VEAERTDTAVQATGSVPSTPIAHRGPSSSLNTPGSFRRGL :::...:.. : ::: .. :. :.::::. :.:.::.. .: ... .: ... CCDS11 LAVRERQQEVTRKSAPSSPTLDCEKMDSAVQASLSLPATPVG-KGTENTFPSP----KAI 190 200 210 220 230 240 250 260 270 280 290 pF1KE5 DDSTGGTPLTPAARISALNIVGDLLRKVGALESKLASCRNLVYDQSPNRT---GGPASGR .. : .::::.::::::::::::::::::::::::.:::.. ::. .. :. : CCDS11 PNGFGTSPLTPSARISALNIVGDLLRKVGALESKLAACRNFAKDQASRKSYISGNVNCGV 240 250 260 270 280 290 300 310 320 330 pF1KE5 SSKNRDGGERRPSSTSVPLGDKGLDTSCRWLSKSTTRSSSSC . : : . : . . ::: CCDS11 LNGN---GTKFSRSGHTSFFDKGAVNGFDPAPPPPGLGSSRPSSAPGMLPLSV 300 310 320 330 340 >>CCDS82070.1 NDEL1 gene_id:81565|Hs108|chr17 (269 aa) initn: 1079 init1: 836 opt: 1046 Z-score: 632.7 bits: 125.1 E(32554): 6.4e-29 Smith-Waterman score: 1046; 64.4% identity (86.6% similar) in 261 aa overlap (8-265:9-264) 10 20 30 40 50 pF1KE5 MEDSGKTFSSEEEEANYWKDLAMTYKQRAENTQEELREFQEGSREYEAELETQLQQIET ::: .::. :::.:.. ::: .....:: :::::::: :::::.:: : : CCDS82 MDGEDIPDFSSLKEETAYWKELSLKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQ 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE5 RNRDLLSENNRLRMELETIKEKFEVQHSEGYRQISALEDDLAQTKAIKDQLQKYIRELEQ ::::: ..:.::..:.:..:::.: :....:.:.:.:::::.::.:::.::.::.::::: CCDS82 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE5 ANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKENLLESVQRLKDEARDLRQE :::::::::::::.:::::::::::::::::::::::::::.:: ::::::::::::::: CCDS82 ANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQE 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE5 LAVQQKQEK-PRTPMPSS--VEAERTDTAVQATGSVPSTPIAHRGPSSSLNTPGSFRRGL :::...:.. : ::: .. :. :.::::. :.:.::.. .: ... .: .. :. CCDS82 LAVRERQQEVTRKSAPSSPTLDCEKMDSAVQASLSLPATPVG-KGTENTFPSPKAIPNGF 190 200 210 220 230 240 250 260 270 280 290 pF1KE5 DDSTGGTPLTPAARISALNIVGDLLRKVGALESKLASCRNLVYDQSPNRTGGPASGRSSK : .::::.::::::::::::::::: CCDS82 ----GTSPLTPSARISALNIVGDLLRKVGGSKRL 240 250 260 335 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 04:06:46 2016 done: Tue Nov 8 04:06:47 2016 Total Scan time: 3.110 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]