Result of FASTA (ccds) for
pFN21AE5007
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5007, 344 aa
1>>>pF1KE5007 344 - 344 aa - 344 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.1628+/-0.00111; mu= 1.5456+/- 0.067
mean_var=303.5251+/-62.573, 0's: 0 Z-trim(113.3): 160 B-trim: 676 in 1/52
Lambda= 0.073617
statistics sampled from 13814 (13981) to 13814 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.736), E-opt: 0.2 (0.429), width: 16
Scan time: 2.420
The best scores are: opt bits E(32554)
CCDS13318.1 SRSF6 gene_id:6431|Hs108|chr20 ( 344) 2254 252.4 3.9e-67
CCDS333.1 SRSF4 gene_id:6429|Hs108|chr1 ( 494) 1385 160.3 3e-39
CCDS32109.1 SRSF5 gene_id:6430|Hs108|chr14 ( 272) 1036 123.0 2.9e-28
CCDS11600.1 SRSF1 gene_id:6426|Hs108|chr17 ( 248) 598 76.4 2.8e-14
>>CCDS13318.1 SRSF6 gene_id:6431|Hs108|chr20 (344 aa)
initn: 2254 init1: 2254 opt: 2254 Z-score: 1318.8 bits: 252.4 E(32554): 3.9e-67
Smith-Waterman score: 2254; 100.0% identity (100.0% similar) in 344 aa overlap (1-344:1-344)
10 20 30 40 50 60
pF1KE5 MPRVYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MPRVYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 CGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLSSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 CGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLSSR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 CSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIRLIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 CSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIRLIE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 DKPRTSHRRSYSGSRSRSRSRRRSRSRSRRSSRSRSRSISKSRSRSRSRSKGRSRSRSKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DKPRTSHRRSYSGSRSRSRSRRRSRSRSRRSSRSRSRSISKSRSRSRSRSKGRSRSRSKG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 RKSRSKSKSKPKSDRGSHSHSRSRSKDEYEKSRSRSRSRSPKENGKGDIKSKSRSRSQSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RKSRSKSKSKPKSDRGSHSHSRSRSKDEYEKSRSRSRSRSPKENGKGDIKSKSRSRSQSR
250 260 270 280 290 300
310 320 330 340
pF1KE5 SNSPLPVPPSKARSVSPPPKRATSRSRSRSRSKSRSRSRSSSRD
::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SNSPLPVPPSKARSVSPPPKRATSRSRSRSRSKSRSRSRSSSRD
310 320 330 340
>>CCDS333.1 SRSF4 gene_id:6429|Hs108|chr1 (494 aa)
initn: 1340 init1: 840 opt: 1385 Z-score: 818.1 bits: 160.3 E(32554): 3e-39
Smith-Waterman score: 1427; 66.5% identity (82.0% similar) in 361 aa overlap (1-344:1-352)
10 20 30 40 50 60
pF1KE5 MPRVYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKEL
:::::::::::..::.:..:::.:::..::::::::::::::.: :::::::::::::.:
CCDS33 MPRVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 CGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLSSR
::::::::::::::: :: :::: : .::. :: :::::::::.::::::::::::::
CCDS33 CGERVIVEHARGPRR--DG-SYGS--GRSGYGYRR-SGRDKYGPPTRTEYRLIVENLSSR
70 80 90 100 110
130 140 150 160 170 180
pF1KE5 CSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIRLIE
::::::::.:::::::::::::: : ::::::: :::::::::.::::::.:::.:::.:
CCDS33 CSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVE
120 130 140 150 160 170
190 200 210 220 230
pF1KE5 DKPRTSHRRSYSGSRSRSRSRRRSR----SRSR----RSSRSRSRSISKSRSRSRSRSKG
::: . .::::: :::.:::: ::: :::: .::.:.::: :.: :::::.:..
CCDS33 DKPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRS
180 190 200 210 220 230
240 250 260 270 280
pF1KE5 RSRSRSKGRKSRSKSKSKPKSDRGSHS--HSRSRSKDEYEK------SRSRSRSRSPKEN
::.:::...: .:.: :: :: ::: .:::.:::. :. . .. .::::...
CCDS33 RSQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRSPSRH
240 250 260 270 280 290
290 300 310 320 330 340
pF1KE5 GKGDIKSKSRSRSQSRSNSPLPVPP-SKARSVSPPPKRATSRSRSRSRSKSRSRSRSSSR
. ::::::::: : :..:: ... :::::.. :.:::::::.:.
CCDS33 KS---KSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRSRSKSK
300 310 320 330 340 350
pF1KE5 D
:
CCDS33 DKRKGRKRSREESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQSRSPSRSV
360 370 380 390 400 410
>>CCDS32109.1 SRSF5 gene_id:6430|Hs108|chr14 (272 aa)
initn: 1608 init1: 522 opt: 1036 Z-score: 620.9 bits: 123.0 E(32554): 2.9e-28
Smith-Waterman score: 1048; 62.5% identity (79.3% similar) in 280 aa overlap (3-280:5-267)
10 20 30 40 50
pF1KE5 MPRVYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGK
::.::::. .::::..:::.::::. ..::: :.::::::: ::::::::::.::
CCDS32 MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGK
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE5 ELCGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLS
:::.::: .::::. :.: : . : : .:::: . . .:::::: ::::::::
CCDS32 ELCSERVTIEHARA--RSRGGRGRGRYSDR--FSSRRPRNDRRNAPPVRTENRLIVENLS
70 80 90 100 110
120 130 140 150 160 170
pF1KE5 SRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIRL
:: ::::::::::::::::.::::. . ::::.:: ::.:.: :..::.: :::::.:.:
CCDS32 SRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKL
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE5 IEDKPRTSHRRSYSGSRSRSRSRRRSRSRSRRSSRSRSRSISKSR-SRSRSRSKGRSRSR
:: ::. .:::: :::::.: :::::::: :.:: : :::::..:::::
CCDS32 IE------------GSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSR
180 190 200 210 220
240 250 260 270 280 290
pF1KE5 SKGRKSRSKSKSKPKSD-RGSHSHSRSRSKDEYEKSRSRSRSRSPKENGKGDIKSKSRSR
::.: : :.: ::. ::: :.:.: .. . ..:::::::::
CCDS32 SKSR-SVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRSVDSGN
230 240 250 260 270
300 310 320 330 340
pF1KE5 SQSRSNSPLPVPPSKARSVSPPPKRATSRSRSRSRSKSRSRSRSSSRD
>>CCDS11600.1 SRSF1 gene_id:6426|Hs108|chr17 (248 aa)
initn: 1046 init1: 210 opt: 598 Z-score: 370.0 bits: 76.4 E(32554): 2.8e-14
Smith-Waterman score: 598; 46.9% identity (65.8% similar) in 243 aa overlap (3-238:17-248)
10 20 30 40
pF1KE5 MPRVYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYG-----FVE
:.:.: : ..: :::. : :: . ..:::: : :::
CCDS11 MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE5 FEDSRDADDAVYELNGKELCGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDK
::: :::.:::: .: . : :. :: :: : : . :. .:::: . : ::
CCDS11 FEDPRDAEDAVYGRDGYDYDGYRLRVEF---PRSGR-GTGRGGGGGGGGGAPR---GR--
70 80 90 100 110
110 120 130 140 150 160
pF1KE5 YGPPVR-TEYRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMK
:::: : .: :..: .: ::::::: ::.::.: :::.... : ::.:: ::
CCDS11 YGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGT--GVVEFVRKEDMT
120 130 140 150 160
170 180 190 200 210 220
pF1KE5 RALDKLDGTEINGRNIRLIEDKPRTSHRRSYSGSRSRSRSRRRSRSRSRRSSRSRSRSIS
:. :::.:.. ... . . ... :: : .::::::: ::::::: .::::: :
CCDS11 YAVRKLDNTKFRSHEGETAYIRVKVDGPRSPSYGRSRSRSRSRSRSRSRSNSRSRSYSPR
170 180 190 200 210 220
230 240 250 260 270
pF1KE5 KSRSRSR-SRSKGRSRSRSKGRKSRSKSKSKPKSDRGSHSHSRSRSKDEYEKSRSRSRSR
.::. : : ..:::::.
CCDS11 RSRGSPRYSPRHSRSRSRT
230 240
344 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 04:06:09 2016 done: Tue Nov 8 04:06:10 2016
Total Scan time: 2.420 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]