FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2720, 308 aa 1>>>pF1KE2720 308 - 308 aa - 308 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.8944+/-0.000896; mu= 13.5891+/- 0.054 mean_var=92.8456+/-17.853, 0's: 0 Z-trim(108.2): 23 B-trim: 0 in 0/51 Lambda= 0.133105 statistics sampled from 10047 (10050) to 10047 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.693), E-opt: 0.2 (0.309), width: 16 Scan time: 1.110 The best scores are: opt bits E(32554) CCDS9775.1 FUT8 gene_id:2530|Hs108|chr14 ( 575) 1917 378.3 7.7e-105 CCDS9776.2 FUT8 gene_id:2530|Hs108|chr14 ( 412) 822 167.9 1.2e-41 >>CCDS9775.1 FUT8 gene_id:2530|Hs108|chr14 (575 aa) initn: 1917 init1: 1917 opt: 1917 Z-score: 1995.7 bits: 378.3 E(32554): 7.7e-105 Smith-Waterman score: 1917; 99.6% identity (100.0% similar) in 279 aa overlap (1-279:1-279) 10 20 30 40 50 60 pF1KE2 MRPWTGSWRWIMLILFAWGTLLFYIGGHLVRDNDHPDHSSRELSKILAKLERLKQQNEDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS97 MRPWTGSWRWIMLILFAWGTLLFYIGGHLVRDNDHPDHSSRELSKILAKLERLKQQNEDL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 RRMAESLRIPEGPIDQGPAIGRVRVLEEQLVKAKEQIENYKKQTRNGLGKDHEILRRRIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS97 RRMAESLRIPEGPIDQGPAIGRVRVLEEQLVKAKEQIENYKKQTRNGLGKDHEILRRRIE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 NGAKELWFFLQSELKKLKNLEGNELQRHADEFLLDLGHYERSIMTDLYYLSQTDGAGDWR ::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::: CCDS97 NGAKELWFFLQSELKKLKNLEGNELQRHADEFLLDLGHHERSIMTDLYYLSQTDGAGDWR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 EKEAKDLTELVQRRITYLQNPKDCSKAKKLVCNINKGCGYGCQLHHVVYCFMIAYGTQRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS97 EKEAKDLTELVQRRITYLQNPKDCSKAKKLVCNINKGCGYGCQLHHVVYCFMIAYGTQRT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 LILESQNWRYATGGWETVFRPVSETCTDRSGISTGHWSGTPIMNLLVITLFPGQLDCTID ::::::::::::::::::::::::::::::::::::::: CCDS97 LILESQNWRYATGGWETVFRPVSETCTDRSGISTGHWSGEVKDKNVQVVELPIVDSLHPR 250 260 270 280 290 300 pF1KE2 TQKIHFVE CCDS97 PPYLPLAVPEDLADRLVRVHGDPAVWWVSQFVKYLIRPQPWLEKEIEEATKKLGFKHPVI 310 320 330 340 350 360 >>CCDS9776.2 FUT8 gene_id:2530|Hs108|chr14 (412 aa) initn: 822 init1: 822 opt: 822 Z-score: 861.3 bits: 167.9 E(32554): 1.2e-41 Smith-Waterman score: 822; 100.0% identity (100.0% similar) in 116 aa overlap (164-279:1-116) 140 150 160 170 180 190 pF1KE2 LKKLKNLEGNELQRHADEFLLDLGHYERSIMTDLYYLSQTDGAGDWREKEAKDLTELVQR :::::::::::::::::::::::::::::: CCDS97 MTDLYYLSQTDGAGDWREKEAKDLTELVQR 10 20 30 200 210 220 230 240 250 pF1KE2 RITYLQNPKDCSKAKKLVCNINKGCGYGCQLHHVVYCFMIAYGTQRTLILESQNWRYATG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS97 RITYLQNPKDCSKAKKLVCNINKGCGYGCQLHHVVYCFMIAYGTQRTLILESQNWRYATG 40 50 60 70 80 90 260 270 280 290 300 pF1KE2 GWETVFRPVSETCTDRSGISTGHWSGTPIMNLLVITLFPGQLDCTIDTQKIHFVE :::::::::::::::::::::::::: CCDS97 GWETVFRPVSETCTDRSGISTGHWSGEVKDKNVQVVELPIVDSLHPRPPYLPLAVPEDLA 100 110 120 130 140 150 308 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Wed Jun 6 17:55:32 2018 done: Wed Jun 6 17:55:32 2018 Total Scan time: 1.110 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]