FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2733, 348 aa
  1>>>pF1KE2733     348 - 348 aa - 348 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.8889+/-0.000737; mu= 8.1490+/- 0.045
 mean_var=215.3707+/-42.226, 0's: 0 Z-trim(117.7): 85  B-trim: 51 in 1/54
 Lambda= 0.087394
 statistics sampled from 18640 (18729) to 18640 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.844), E-opt: 0.2 (0.56), width:  16
 Scan time:  1.520

The best scores are:                                      opt bits E(33420)
CCDS13706.1 AIRE gene_id:326|Hs109|chr21           ( 545) 1881 249.1 6.7e-66


>>CCDS13706.1 AIRE gene_id:326|Hs109|chr21                (545 aa)
 initn: 1851 init1: 1851 opt: 1881  Z-score: 1296.8  bits: 249.1 E(33420): 6.7e-66
Smith-Waterman score: 1881; 83.5% identity (89.8% similar) in 322 aa overlap (29-348:227-545)

                 10        20        30        40        50        
pF1KE2   MWLVYSSGAPGTQQPARNRVFFPIGMAPGGVCWRPDGWGTGGQGRISGPGSMGAGQRL
                                     ::  . :. .  .:.:. .. .: :    .
CCDS13 GDVPGARGAVEGILIQQVFESGGSKKCIQVGGEFYTPSKFEDSGSGKNKARSSSGPKPLV
        200       210       220       230       240       250      

       60        70         80        90        100       110      
pF1KE2 GSSGTQRCCWGSCFGKEVAL-RRVLHPSPVCMGVS-CLCQKNEDECAVCRDGGELICCDG
        ..:.:    :   : :. : ..   :.:. .  .  : :::::::::::::::::::::
CCDS13 RAKGAQGAAPG---GGEARLGQQGSVPAPLALPSDPQLHQKNEDECAVCRDGGELICCDG
        260          270       280       290       300       310   

        120       130       140       150       160       170      
pF1KE2 CPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAEEPRPQEPPVETPLPPGLRSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 CPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAEEPRPQEPPVETPLPPGLRSA
           320       330       340       350       360       370   

        180       190       200       210       220       230      
pF1KE2 GEEVRGPPGEPLAGMDTTLVYKHLPAPPSAAPLPGLDSSALHPLLCVGPEGQQNLAPGAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GEEVRGPPGEPLAGMDTTLVYKHLPAPPSAAPLPGLDSSALHPLLCVGPEGQQNLAPGAR
           380       390       400       410       420       430   

        240       250       260       270       280       290      
pF1KE2 CGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTPAPVEGVLAPSPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 CGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTPAPVEGVLAPSPA
           440       450       460       470       480       490   

        300       310       320       330       340        
pF1KE2 RLAPGPAKDDTASHEPALHRDDLESLLSEHTFDGILQWAIQSMARPAAPFPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RLAPGPAKDDTASHEPALHRDDLESLLSEHTFDGILQWAIQSMARPAAPFPS
           500       510       520       530       540     




348 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Sep 11 18:46:18 2018 done: Tue Sep 11 18:46:19 2018
 Total Scan time:  1.520 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]