FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5344, 271 aa
  1>>>pF1KE5344 271 - 271 aa - 271 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0130+/-0.000773; mu= 12.1908+/- 0.047
 mean_var=88.7051+/-17.533, 0's: 0 Z-trim(109.7): 8  B-trim: 22 in 1/50
 Lambda= 0.136176
 statistics sampled from 11101 (11106) to 11101 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.716), E-opt: 0.2 (0.341), width:  16
 Scan time:  1.660

The best scores are:                                      opt bits E(32554)
CCDS47502.1 MTRF1L gene_id:54516|Hs108|chr6        ( 271) 1793 361.8 2.9e-100
CCDS5243.1 MTRF1L gene_id:54516|Hs108|chr6         ( 380) 1764 356.2   2e-98
CCDS75540.1 MTRF1L gene_id:54516|Hs108|chr6        ( 235)  911 188.5 3.8e-48
CCDS9378.1 MTRF1 gene_id:9617|Hs108|chr13          ( 445)  703 147.8 1.3e-35


>>CCDS47502.1 MTRF1L gene_id:54516|Hs108|chr6             (271 aa)
 initn: 1793 init1: 1793 opt: 1793  Z-score: 1913.4  bits: 361.8 E(32554): 2.9e-100
Smith-Waterman score: 1793; 100.0% identity (100.0% similar) in 271 aa overlap (1-271:1-271)

               10        20        30        40        50        60
pF1KE5 MRSRVLWGAARWLWPRRAVGPARRPLSSGSPPLEELFTRGGPLRTFLERQAGSEAHLKVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MRSRVLWGAARWLWPRRAVGPARRPLSSGSPPLEELFTRGGPLRTFLERQAGSEAHLKVR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 RPELLAVIKLLNEKERELRETEHLLHDENEDLRKLAENEITLCQKEITQLKHQIILLLVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RPELLAVIKLLNEKERELRETEHLLHDENEDLRKLAENEITLCQKEITQLKHQIILLLVP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 SEETDENDLILEVTAGVGGQEAMLFTSEIFDMYQQYAAFKRWHFETLEYFPSELGGLRHA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SEETDENDLILEVTAGVGGQEAMLFTSEIFDMYQQYAAFKRWHFETLEYFPSELGGLRHA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 SASIGGSEAYRHMKFEGGVHRVQRVPKTEKQGRVHTSTMTVAILPQPTEINLVINPKDLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SASIGGSEAYRHMKFEGGVHRVQRVPKTEKQGRVHTSTMTVAILPQPTEINLVINPKDLR
              190       200       210       220       230       240

              250       260       270 
pF1KE5 IDTKRASGAGGQHVNTTDSAVRIVHLPTDWK
       :::::::::::::::::::::::::::::::
CCDS47 IDTKRASGAGGQHVNTTDSAVRIVHLPTDWK
              250       260       270 

>>CCDS5243.1 MTRF1L gene_id:54516|Hs108|chr6              (380 aa)
 initn: 1764 init1: 1764 opt: 1764  Z-score: 1880.5  bits: 356.2 E(32554): 2e-98
Smith-Waterman score: 1764; 100.0% identity (100.0% similar) in 268 aa overlap (1-268:1-268)

               10        20        30        40        50        60
pF1KE5 MRSRVLWGAARWLWPRRAVGPARRPLSSGSPPLEELFTRGGPLRTFLERQAGSEAHLKVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 MRSRVLWGAARWLWPRRAVGPARRPLSSGSPPLEELFTRGGPLRTFLERQAGSEAHLKVR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 RPELLAVIKLLNEKERELRETEHLLHDENEDLRKLAENEITLCQKEITQLKHQIILLLVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 RPELLAVIKLLNEKERELRETEHLLHDENEDLRKLAENEITLCQKEITQLKHQIILLLVP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 SEETDENDLILEVTAGVGGQEAMLFTSEIFDMYQQYAAFKRWHFETLEYFPSELGGLRHA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 SEETDENDLILEVTAGVGGQEAMLFTSEIFDMYQQYAAFKRWHFETLEYFPSELGGLRHA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 SASIGGSEAYRHMKFEGGVHRVQRVPKTEKQGRVHTSTMTVAILPQPTEINLVINPKDLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 SASIGGSEAYRHMKFEGGVHRVQRVPKTEKQGRVHTSTMTVAILPQPTEINLVINPKDLR
              190       200       210       220       230       240

              250       260       270                              
pF1KE5 IDTKRASGAGGQHVNTTDSAVRIVHLPTDWK                             
       ::::::::::::::::::::::::::::                                
CCDS52 IDTKRASGAGGQHVNTTDSAVRIVHLPTGVVSECQQERSQLKNKELAMTKLRAKLYSMHL
              250       260       270       280       290       300

>>CCDS75540.1 MTRF1L gene_id:54516|Hs108|chr6             (235 aa)
 initn: 911 init1: 911 opt: 911  Z-score: 977.8  bits: 188.5 E(32554): 3.8e-48
Smith-Waterman score: 1463; 86.7% identity (86.7% similar) in 271 aa overlap (1-271:1-235)

               10        20        30        40        50        60
pF1KE5 MRSRVLWGAARWLWPRRAVGPARRPLSSGSPPLEELFTRGGPLRTFLERQAGSEAHLKVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MRSRVLWGAARWLWPRRAVGPARRPLSSGSPPLEELFTRGGPLRTFLERQAGSEAHLKVR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 RPELLAVIKLLNEKERELRETEHLLHDENEDLRKLAENEITLCQKEITQLKHQIILLLVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 RPELLAVIKLLNEKERELRETEHLLHDENEDLRKLAENEITLCQKEITQLKHQIILLLVP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 SEETDENDLILEVTAGVGGQEAMLFTSEIFDMYQQYAAFKRWHFETLEYFPSELGGLRHA
       :::::::::::::::::::                                    :::::
CCDS75 SEETDENDLILEVTAGVGG------------------------------------GLRHA
              130                                           140    

              190       200       210       220       230       240
pF1KE5 SASIGGSEAYRHMKFEGGVHRVQRVPKTEKQGRVHTSTMTVAILPQPTEINLVINPKDLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SASIGGSEAYRHMKFEGGVHRVQRVPKTEKQGRVHTSTMTVAILPQPTEINLVINPKDLR
          150       160       170       180       190       200    

              250       260       270 
pF1KE5 IDTKRASGAGGQHVNTTDSAVRIVHLPTDWK
       :::::::::::::::::::::::::::::::
CCDS75 IDTKRASGAGGQHVNTTDSAVRIVHLPTDWK
          210       220       230     

>>CCDS9378.1 MTRF1 gene_id:9617|Hs108|chr13               (445 aa)
 initn: 673 init1: 302 opt: 703  Z-score: 752.9  bits: 147.8 E(32554): 1.3e-35
Smith-Waterman score: 703; 43.8% identity (74.5% similar) in 267 aa overlap (11-268:67-329)

                                   10        20        30        40
pF1KE5                     MRSRVLWGAARWLWPRRAVGPARRPLSSGSPPLEELFTRG
                                     . :: ..:.    . ::.    ::. . . 
CCDS93 TRLQVFRQNRNCILHLLSKNWSRRYCHQDTKMLWKHKALQKYMENLSKEYQTLEQCL-QH
         40        50        60        70        80        90      

               50        60        70        80           90       
pF1KE5 GPLRTFLERQAGSEAHLKVRRPELLAVIKLLNEKERELRETEHL---LHDENE-DLRKLA
        :.    .:.. .. : ..  : : :. . ..: :. ..: : .   :. ..: .:..::
CCDS93 IPVNEE-NRRSLNRRHAELA-P-LAAIYQEIQETEQAIEELESMCKSLNKQDEKQLQELA
         100        110         120       130       140       150  

        100       110       120       130         140       150    
pF1KE5 ENEITLCQKEITQLKHQIILLLVPSEETDENDLILEVTAG--VGGQEAMLFTSEIFDMYQ
        .:    ...:..: ....  :::.:. :.::.:::::::  .::.  . :: :::::::
CCDS93 LEERQTIDQKINMLYNELFQSLVPKEKYDKNDVILEVTAGRTTGGDICQQFTREIFDMYQ
            160       170       180       190       200       210  

          160       170       180       190       200          210 
pF1KE5 QYAAFKRWHFETLEYFPSELGGLRHASASIGGSEAYRHMKFEGGVHRVQRVPK---TEKQ
       .:. .:.:.:: :.: :.. :::.::.: :.:. .:.:.:.:::.:::::.:.   . ..
CCDS93 NYSCYKHWQFELLNYTPADYGGLHHAAARISGDGVYKHLKYEGGIHRVQRIPEVGLSSRM
            220       230       240       250       260       270  

             220       230       240       250       260       270 
pF1KE5 GRVHTSTMTVAILPQPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAVRIVHLPTDWK
        :.::.::.: .:::: :... ..:::::::: ::.:::::::: ::::::.::.::   
CCDS93 QRIHTGTMSVIVLPQPDEVDVKLDPKDLRIDTFRAKGAGGQHVNKTDSAVRLVHIPTGLV
            280       290       300       310       320       330  

CCDS93 VECQQERSQIKNKEIAFRVLRARLYQQIIEKDKRQQQSARKLQVGTRAQSERIRTYNFTQ
            340       350       360       370       380       390  




271 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 23:58:00 2016 done: Mon Nov  7 23:58:00 2016
 Total Scan time:  1.660 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]