FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5340, 263 aa 1>>>pF1KE5340 263 - 263 aa - 263 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.8576+/-0.000368; mu= 17.0457+/- 0.023 mean_var=60.7304+/-12.189, 0's: 0 Z-trim(111.3): 38 B-trim: 0 in 0/53 Lambda= 0.164578 statistics sampled from 19810 (19823) to 19810 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.618), E-opt: 0.2 (0.232), width: 16 Scan time: 5.390 The best scores are: opt bits E(85289) NP_000998 (OMIM: 312760) 40S ribosomal protein S4, ( 263) 1761 426.7 2.1e-119 NP_000999 (OMIM: 470000) 40S ribosomal protein S4, ( 263) 1668 404.6 9.5e-113 XP_016885550 (OMIM: 470000) PREDICTED: 40S ribosom ( 272) 1661 402.9 3.1e-112 NP_001034656 (OMIM: 400030,415000) 40S ribosomal p ( 263) 1631 395.8 4.2e-110 >>NP_000998 (OMIM: 312760) 40S ribosomal protein S4, X i (263 aa) initn: 1761 init1: 1761 opt: 1761 Z-score: 2264.5 bits: 426.7 E(85289): 2.1e-119 Smith-Waterman score: 1761; 100.0% identity (100.0% similar) in 263 aa overlap (1-263:1-263) 10 20 30 40 50 60 pF1KE5 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 VKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 VKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 YKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 YKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 CMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 CMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPR 190 200 210 220 230 240 250 260 pF1KE5 GKGIRLTIAEERDKRLAAKQSSG ::::::::::::::::::::::: NP_000 GKGIRLTIAEERDKRLAAKQSSG 250 260 >>NP_000999 (OMIM: 470000) 40S ribosomal protein S4, Y i (263 aa) initn: 1668 init1: 1668 opt: 1668 Z-score: 2145.2 bits: 404.6 E(85289): 9.5e-113 Smith-Waterman score: 1668; 92.8% identity (98.1% similar) in 263 aa overlap (1-263:1-263) 10 20 30 40 50 60 pF1KE5 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE :::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::: NP_000 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 VKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAK :::::::::::::::::.:.::::::::::::.::::.:::.::::::::::::: :::: NP_000 VKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 YKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNL ::::::::: ::.:::::::::::::::::::.::::::.:::: :::: .::::::::: NP_000 YKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 CMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPR ::: :::::::.:::::::::::::::::::::::::::::::::::::.:::::::::: NP_000 CMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPR 190 200 210 220 230 240 250 260 pF1KE5 GKGIRLTIAEERDKRLAAKQSSG :::::::.:::::::::.::::: NP_000 GKGIRLTVAEERDKRLATKQSSG 250 260 >>XP_016885550 (OMIM: 470000) PREDICTED: 40S ribosomal p (272 aa) initn: 1661 init1: 1661 opt: 1661 Z-score: 2136.0 bits: 402.9 E(85289): 3.1e-112 Smith-Waterman score: 1661; 92.7% identity (98.1% similar) in 262 aa overlap (2-263:11-272) 10 20 30 40 50 pF1KE5 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNR ::::::::::::::::::::::::::::::::::::::::::::.::::: XP_016 MLGRPAKFSKARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNR 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE5 LKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAV ::::::::::::::::::::::::::.:.::::::::::::.::::.:::.::::::::: XP_016 LKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAV 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE5 HRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITD :::: ::::::::::::: ::.:::::::::::::::::::.::::::.:::: :::: . XP_016 HRITVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIIN 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE5 FIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKG :::::::::::: :::::::.:::::::::::::::::::::::::::::::::::::.: XP_016 FIKFDTGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNG 190 200 210 220 230 240 240 250 260 pF1KE5 NKPWISLPRGKGIRLTIAEERDKRLAAKQSSG ::::::::::::::::.:::::::::.::::: XP_016 NKPWISLPRGKGIRLTVAEERDKRLATKQSSG 250 260 270 >>NP_001034656 (OMIM: 400030,415000) 40S ribosomal prote (263 aa) initn: 1631 init1: 1631 opt: 1631 Z-score: 2097.7 bits: 395.8 E(85289): 4.2e-110 Smith-Waterman score: 1631; 91.6% identity (97.7% similar) in 263 aa overlap (1-263:1-263) 10 20 30 40 50 60 pF1KE5 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE :::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::: NP_001 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 VKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAK :::::::.:.:::::::.::::::::.:::::.::::.:::.:.::: ::::::: :::: NP_001 VKKICMQHFLKIDGKVRVDITYPAGFIDVISIEKTGEHFRLVYNTKGCFAVHRITVEEAK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 YKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNL ::::::::: :::::::::::::::::::::::::::::.:::: :::::.::::::::. NP_001 YKLCKVRKITVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKITSFIKFDTGNV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 CMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPR ::: .::::::.:::::::::::: ::::::::::::::::.:::::::.:::::::::: NP_001 CMVIAGANLGRVGVITNRERHPGSCDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPR 190 200 210 220 230 240 250 260 pF1KE5 GKGIRLTIAEERDKRLAAKQSSG ::::::::::::::::::::::: NP_001 GKGIRLTIAEERDKRLAAKQSSG 250 260 263 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 23:56:09 2016 done: Mon Nov 7 23:56:10 2016 Total Scan time: 5.390 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]