FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5340, 263 aa 1>>>pF1KE5340 263 - 263 aa - 263 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4700+/-0.000828; mu= 13.2990+/- 0.049 mean_var=57.0886+/-11.551, 0's: 0 Z-trim(104.9): 20 B-trim: 0 in 0/51 Lambda= 0.169746 statistics sampled from 8154 (8160) to 8154 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.642), E-opt: 0.2 (0.251), width: 16 Scan time: 1.870 The best scores are: opt bits E(32554) CCDS14418.1 RPS4X gene_id:6191|Hs108|chrX ( 263) 1761 439.4 1.2e-123 CCDS14773.1 RPS4Y1 gene_id:6192|Hs108|chrY ( 263) 1668 416.7 8.4e-117 CCDS44028.1 RPS4Y2 gene_id:140032|Hs108|chrY ( 263) 1631 407.6 4.5e-114 >>CCDS14418.1 RPS4X gene_id:6191|Hs108|chrX (263 aa) initn: 1761 init1: 1761 opt: 1761 Z-score: 2333.5 bits: 439.4 E(32554): 1.2e-123 Smith-Waterman score: 1761; 100.0% identity (100.0% similar) in 263 aa overlap (1-263:1-263) 10 20 30 40 50 60 pF1KE5 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 VKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 VKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 YKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 YKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 CMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 CMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPR 190 200 210 220 230 240 250 260 pF1KE5 GKGIRLTIAEERDKRLAAKQSSG ::::::::::::::::::::::: CCDS14 GKGIRLTIAEERDKRLAAKQSSG 250 260 >>CCDS14773.1 RPS4Y1 gene_id:6192|Hs108|chrY (263 aa) initn: 1668 init1: 1668 opt: 1668 Z-score: 2210.5 bits: 416.7 E(32554): 8.4e-117 Smith-Waterman score: 1668; 92.8% identity (98.1% similar) in 263 aa overlap (1-263:1-263) 10 20 30 40 50 60 pF1KE5 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE :::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::: CCDS14 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 VKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAK :::::::::::::::::.:.::::::::::::.::::.:::.::::::::::::: :::: CCDS14 VKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 YKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNL ::::::::: ::.:::::::::::::::::::.::::::.:::: :::: .::::::::: CCDS14 YKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 CMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPR ::: :::::::.:::::::::::::::::::::::::::::::::::::.:::::::::: CCDS14 CMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPR 190 200 210 220 230 240 250 260 pF1KE5 GKGIRLTIAEERDKRLAAKQSSG :::::::.:::::::::.::::: CCDS14 GKGIRLTVAEERDKRLATKQSSG 250 260 >>CCDS44028.1 RPS4Y2 gene_id:140032|Hs108|chrY (263 aa) initn: 1631 init1: 1631 opt: 1631 Z-score: 2161.5 bits: 407.6 E(32554): 4.5e-114 Smith-Waterman score: 1631; 91.6% identity (97.7% similar) in 263 aa overlap (1-263:1-263) 10 20 30 40 50 60 pF1KE5 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE :::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::: CCDS44 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 VKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAK :::::::.:.:::::::.::::::::.:::::.::::.:::.:.::: ::::::: :::: CCDS44 VKKICMQHFLKIDGKVRVDITYPAGFIDVISIEKTGEHFRLVYNTKGCFAVHRITVEEAK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 YKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNL ::::::::: :::::::::::::::::::::::::::::.:::: :::::.::::::::. CCDS44 YKLCKVRKITVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKITSFIKFDTGNV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 CMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPR ::: .::::::.:::::::::::: ::::::::::::::::.:::::::.:::::::::: CCDS44 CMVIAGANLGRVGVITNRERHPGSCDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPR 190 200 210 220 230 240 250 260 pF1KE5 GKGIRLTIAEERDKRLAAKQSSG ::::::::::::::::::::::: CCDS44 GKGIRLTIAEERDKRLAAKQSSG 250 260 263 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 23:56:09 2016 done: Mon Nov 7 23:56:09 2016 Total Scan time: 1.870 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]